Saturday, November 12, 2016

EOL Traitbank JSON-LD is broken

Follow eol on twitterOne of the most interesting aspects of EOL is "TraitBank", which has been described in a recent paper:

Cynthia S. Parr, Katja S. Schulz, Jennifer Hammock, Nathan Wilson, Patrick Leary, Jeremy Rice, & Robert J. Corrigan. (2016). TraitBank: Practical semantics for organism attribute data. Semantic Web, 7(6), 577–588. https://doi.org/10.3233/SW-150190

TraitBank is available in JSON-LD, and so is potentially part of the Semantic Web. Unfortunately, the JSON-LD provided by TraitBank is broken, to the point that it's hard to believe that anyone's actually consuming the JSON-LD. I know that Google is using EOL data for their knowledge panels, but anyone using TraitBank JSON-LD in a semantic web client is going to run into problems.

First off, let's look at the example provided in the above paper, http://eol.org/api/traits/328067 which returns data for Potos flavus.

{ "@context": { "@vocab": "http://schema.org/", "dwc:taxonID": { "@type": "@id" }, "dwc:resourceID": { "@type": "@id" }, "dwc:relatedResourceID": { "@type": "@id" }, "dwc:relationshipOfResource": { "@type": "@id" }, "dwc:vernacularName": { "@container": "@language" }, "eol:associationType": { "@type": "@id" }, "rdfs:label": { "@container": "@language" }, "dc": "http://purl.org/dc/terms/", "dwc": "http://rs.tdwg.org/dwc/terms/", "eolterms": "http://eol.org/schema/terms/", "eol": "http://eol.org/schema/", "rdfs": "http://www.w3.org/2000/01/rdf-schema#", "gbif": "http://rs.gbif.org/terms/1.0/", "foaf": "http://xmlns.com/foaf/0.1/" }, "@type": "DataFeedItem", "dateModified": "2016-09-30", "item": { "@id": 328067, "@type": "dwc:Taxon", "scientificName": "Potos flavus (Schreber, 1774)", "dwc:taxonRank": "species", "dwc:parentNameUsageID": "http://eol.org/pages/14191", "potentialAction": { "@type": "EntryPoint", "target": { "@type": "Related", "url": "http://eol.org/pages/328067", "actionPlatform": [ "http://schema.org/DesktopWebPlatform", "http://schema.org/IOSPlatform", "http://schema.org/AndroidPlatform" ] } }, "sameAs": [ "http://www.iucnredlist.org/details/41679", "http://genomics.senescence.info/species/entry.php?species=Potos_flavus", "http://commons.wikimedia.org/wiki/Potos_flavus", "http://www.biolib.cz/en/taxon/id1790/", "http://www.iucnredlist.org/apps/redlist/details/41679", "http://www.discoverlife.org/mp/20q?search=Potos+flavus", "http://www.eco-index.org/search/keyword_complete.cfm?keyword=Potos flavus", "http://calphotos.berkeley.edu/cgi/img_query?seq_num=31541&one=T", "http://www.conabio.gob.mx/conocimiento/ise/fichasnom/Potosflavus00.pdf", "http://darnis.inbio.ac.cr/ubis/FMPro?-DB=UBIPUB.fp3&-lay=WebAll&-error=norec.html&-Format=detail.html&-Op=eq&-Find=&id=1689", "http://lod.taxonconcept.org/ses/2mOvV.html", "http://neotropnathistory.lifedesks.org/pages/45271", "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=73392", "http://www.catalogueoflife.org/annual-checklist/details/species/id/6902599", "http://www.catalogueoflife.org/annual-checklist/details/species/id/6902599", "http://genomics.senescence.info/species/entry.php?species=Potos_flavus", "http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=621964", "http://en.wikipedia.org/w/index.php?title=Kinkajou", "http://www.iucnredlist.org/apps/redlist/details/41679", "http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=29067", "http://eol.org/pages/328067", "http://animaldiversity.ummz.umich.edu/accounts/Potos_flavus/" ], "vernacularNames": [ { "@language": "af", "@value": "rolbeer", "gbif:isPreferredName": true }, { "@language": "af", "@value": "rolstaartbeer" }, { "@language": "de", "@value": "wickelbär", "gbif:isPreferredName": true }, { "@language": "en", "@value": "Kinkajou", "gbif:isPreferredName": true }, { "@language": "en", "@value": "honey bear" }, { "@language": "es", "@value": "Ak' a' mash", "gbif:isPreferredName": true }, { "@language": "es", "@value": "Chosna" }, { "@language": "es", "@value": "Cusu" }, { "@language": "es", "@value": "Martilla" }, { "@language": "es", "@value": "Martucha" }, { "@language": "es", "@value": "Mico de noche" }, { "@language": "es", "@value": "Mico león" }, { "@language": "es", "@value": "Mono michi" }, { "@language": "es", "@value": "Perro de monte" }, { "@language": "fi", "@value": "Kinkaju", "gbif:isPreferredName": true }, { "@language": "fr", "@value": "Kinkajou, Singe de nuit", "gbif:isPreferredName": true }, { "@language": "nl", "@value": "rolstaartbeer", "gbif:isPreferredName": true }, { "@language": "nl", "@value": "nachtaap" }, { "@language": "pt-BR", "@value": "Jupará", "gbif:isPreferredName": true } ], "traits": [ { "@id": "http://eol.org/pages/328067/data#data_point_949469", "eol:traitUri": "http://eol.org/resources/704/measurements/basalmetrate113", "@type": "dwc:MeasurementOrFact", "predicate": "metabolic rate", "dwc:measurementType": "http://www.owl-ontologies.com/unnamed.owl#Metabolic_rate", "value": "731.33", "units": "mL/hr O2", "eol:dataPointId": 949469, "http://purl.obolibrary.org/obo/VT_0001259": "http://eol.org/resources/704/measurements/metratemass113", "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Basal metabolic rate was measured when individual(s) were experiencing neither heat nor cold stress (i.e. are in their thermoneutral zone); are resting and calm; and are post–absorptive (are not digesting or absorbing a meal) and data were only accepted where there was also a measure of body mass for the same individual(s). Based on information from primary and secondary literature sources. This value represents a single measure of central tendency for this species. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "731.33", "dwc:measurementUnit": "http://eol.org/schema/terms/mlO2perhour", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_46140963", "eol:traitUri": "http://eol.org/resources/737/measurements/e5775a49cc4bbe3f3ae5c391776a467a", "@type": "dwc:MeasurementOrFact", "predicate": "population trend", "dwc:measurementType": "http://iucn.org/population_trend", "value": "Decreasing", "eol:dataPointId": 46140963, "dc:source": "http://eol.org/resources/737", "dwc:measurementValue": "Decreasing", "dwc:scientificName": "Potos flavus (Schreber, 1774)", "eolterms:resource": "http://eol.org/resources/737" }, { "@id": "http://eol.org/pages/328067/data#data_point_46140962", "eol:traitUri": "http://eol.org/resources/737/measurements/25c8b74374d04260b047bd57570e094b", "@type": "dwc:MeasurementOrFact", "predicate": "habitat", "dwc:measurementType": "http://rs.tdwg.org/dwc/terms/habitat", "value": "terrestrial habitat", "eol:dataPointId": 46140962, "dc:source": "http://eol.org/resources/737", "dwc:measurementValue": "http://purl.obolibrary.org/obo/ENVO_00002009", "dwc:scientificName": "Potos flavus (Schreber, 1774)", "eolterms:resource": "http://eol.org/resources/737" }, { "@id": "http://eol.org/pages/328067/data#data_point_949459", "eol:traitUri": "http://eol.org/resources/704/measurements/maxlongevity138", "@type": "dwc:MeasurementOrFact", "predicate": "total life span", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0001661", "value": "348", "units": "months", "eol:dataPointId": 949459, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Maximum adult age measured either through direct observation, capture-recapture estimates, projected from physical wear or unspecified, using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; in all localities. See source for details.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001114", "dwc:measurementValue": "348", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000035", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949460", "eol:traitUri": "http://eol.org/resources/704/measurements/littersperyear728", "@type": "dwc:MeasurementOrFact", "predicate": "litters per year", "dwc:measurementType": "http://eol.org/schema/terms/LittersPerYear", "value": "1", "eol:dataPointId": 949460, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Number of litters per female per year using non-captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "1", "dwc:scientificName": "Potos flavus", "dwc:sex": "http://purl.obolibrary.org/obo/PATO_0000383" }, { "@id": "http://eol.org/pages/328067/data#data_point_949461", "eol:traitUri": "http://eol.org/resources/704/measurements/littersize1554", "@type": "dwc:MeasurementOrFact", "predicate": "clutch/brood/litter size", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0001933", "value": "1.11", "eol:dataPointId": 949461, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Number of offspring born per litter per female, either counted before birth, at birth or after birth, using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "1.11", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949462", "eol:traitUri": "http://eol.org/resources/704/measurements/interbirthinterval291", "@type": "dwc:MeasurementOrFact", "predicate": "inter-birth interval", "dwc:measurementType": "http://eol.org/schema/terms/InterBirthInterval", "value": "365", "units": "days", "eol:dataPointId": 949462, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "The length of time between successive births of the same female(s) after a successful or unspecified litter using non-captive, wild, provisioned, or unspecified populations; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "365", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000033", "dwc:scientificName": "Potos flavus", "dwc:sex": "http://purl.obolibrary.org/obo/PATO_0000383" }, { "@id": "http://eol.org/pages/328067/data#data_point_949463", "eol:traitUri": "http://eol.org/resources/704/measurements/grmaxlat1392", "@type": "dwc:MeasurementOrFact", "predicate": "latitude", "dwc:measurementType": "http://semanticscience.org/resource/SIO_000319", "value": "23.72", "units": "decimal degrees", "eol:dataPointId": 949463, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Digital geographic range maps of all extant, non-marine mammals from Sechrest (2003) were converted to the Wilson and Reeder (2005) taxonomy. These ranges were used to generate measures of geographic range extent and occupancy. Spatial analyses were performed using ArcGIS (version 9.0) (ESRI 2005) for areas and R (R Development Core Team 2005) for geographic coordinates. Value calculated using a global geographic projection.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001114", "dwc:measurementValue": "23.72", "dwc:measurementUnit": "http://eol.org/schema/terms/decimaldegrees", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949464", "eol:traitUri": "http://eol.org/resources/704/measurements/midrangelong3692", "@type": "dwc:MeasurementOrFact", "predicate": "longitude", "dwc:measurementType": "http://semanticscience.org/resource/SIO_000318", "value": "-68.67", "units": "decimal degrees", "eol:dataPointId": 949464, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Digital geographic range maps of all extant, non-marine mammals from Sechrest (2003) were converted to the Wilson and Reeder (2005) taxonomy. These ranges were used to generate measures of geographic range extent and occupancy. Spatial analyses were performed using ArcGIS (version 9.0) (ESRI 2005) for areas and R (R Development Core Team 2005) for geographic coordinates. Value calculated using a global geographic projection.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001110", "dwc:measurementValue": "-68.67", "dwc:measurementUnit": "http://eol.org/schema/terms/decimaldegrees", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949465", "eol:traitUri": "http://eol.org/resources/704/measurements/grminlong4209", "@type": "dwc:MeasurementOrFact", "predicate": "longitude", "dwc:measurementType": "http://semanticscience.org/resource/SIO_000318", "value": "-102.55", "units": "decimal degrees", "eol:dataPointId": 949465, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Digital geographic range maps of all extant, non-marine mammals from Sechrest (2003) were converted to the Wilson and Reeder (2005) taxonomy. These ranges were used to generate measures of geographic range extent and occupancy. Spatial analyses were performed using ArcGIS (version 9.0) (ESRI 2005) for areas and R (R Development Core Team 2005) for geographic coordinates. Value calculated using a global geographic projection.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001113", "dwc:measurementValue": "-102.55", "dwc:measurementUnit": "http://eol.org/schema/terms/decimaldegrees", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_45346815", "eol:traitUri": "http://eol.org/resources/976/measurements/m_00269876", "@type": "dwc:MeasurementOrFact", "predicate": "geographic distribution includes", "dwc:measurementType": "http://eol.org/schema/terms/Present", "value": "Southern Mesoamerican Pacific mangroves", "eol:dataPointId": 45346815, "dc:source": "http://www.worldwildlife.org/publications/wildfinder-database", "dc:bibliographicCitation": "World Wildlife Fund. 2006. WildFinder: Online database of species distributions, ver. Jan-06. www.worldwildlife.org/WildFinder", "dwc:measurementValue": "http://eol.org/schema/terms/Southern_Mesoamerican_Pacific_mangroves", "dwc:scientificName": "Potos flavus", "dc:contributor": "Compiler: Sarah Miller", "dwc:measurementRemarks": "Biome: Mangroves

Realm: Neotropical", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_45346814", "eol:traitUri": "http://eol.org/resources/976/measurements/m_00269875", "@type": "dwc:MeasurementOrFact", "predicate": "geographic distribution includes", "dwc:measurementType": "http://eol.org/schema/terms/Present", "value": "Southern Atlantic mangroves", "eol:dataPointId": 45346814, "dc:source": "http://www.worldwildlife.org/publications/wildfinder-database", "dc:bibliographicCitation": "World Wildlife Fund. 2006. WildFinder: Online database of species distributions, ver. Jan-06. www.worldwildlife.org/WildFinder", "dwc:measurementValue": "http://eol.org/schema/terms/Southern_Atlantic_mangroves", "dwc:scientificName": "Potos flavus", "dc:contributor": "Compiler: Sarah Miller", "dwc:measurementRemarks": "Biome: Mangroves

Realm: Neotropical", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_45346813", "eol:traitUri": "http://eol.org/resources/976/measurements/m_00269874", "@type": "dwc:MeasurementOrFact", "predicate": "geographic distribution includes", "dwc:measurementType": "http://eol.org/schema/terms/Present", "value": "South American Pacific mangroves", "eol:dataPointId": 45346813, "dc:source": "http://www.worldwildlife.org/publications/wildfinder-database", "dc:bibliographicCitation": "World Wildlife Fund. 2006. WildFinder: Online database of species distributions, ver. Jan-06. www.worldwildlife.org/WildFinder", "dwc:measurementValue": "http://eol.org/schema/terms/South_American_Pacific_mangroves", "dwc:scientificName": "Potos flavus", "dc:contributor": "Compiler: Sarah Miller", "dwc:measurementRemarks": "Biome: Mangroves

Realm: Neotropical", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_45346812", "eol:traitUri": "http://eol.org/resources/976/measurements/m_00269873", "@type": "dwc:MeasurementOrFact", "predicate": "geographic distribution includes", "dwc:measurementType": "http://eol.org/schema/terms/Present", "value": "Northern Mesoamerican Pacific mangroves", "eol:dataPointId": 45346812, "dc:source": "http://www.worldwildlife.org/publications/wildfinder-database", "dc:bibliographicCitation": "World Wildlife Fund. 2006. WildFinder: Online database of species distributions, ver. Jan-06. www.worldwildlife.org/WildFinder", "dwc:measurementValue": "http://eol.org/schema/terms/Northern_Mesoamerican_Pacific_mangroves", "dwc:scientificName": "Potos flavus", "dc:contributor": "Compiler: Sarah Miller", "dwc:measurementRemarks": "Biome: Mangroves

Realm: Neotropical", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_45346811", "eol:traitUri": "http://eol.org/resources/976/measurements/m_00269872", "@type": "dwc:MeasurementOrFact", "predicate": "geographic distribution includes", "dwc:measurementType": "http://eol.org/schema/terms/Present", "value": "Mesoamerican Gulf-Caribbean mangroves", "eol:dataPointId": 45346811, "dc:source": "http://www.worldwildlife.org/publications/wildfinder-database", "dc:bibliographicCitation": "World Wildlife Fund. 2006. WildFinder: Online database of species distributions, ver. Jan-06. www.worldwildlife.org/WildFinder", "dwc:measurementValue": "http://eol.org/schema/terms/Mesoamerican_Gulf-Caribbean_mangroves", "dwc:scientificName": "Potos flavus", "dc:contributor": "Compiler: Sarah Miller", "dwc:measurementRemarks": "Biome: Mangroves

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Realm: Neotropical", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_45346714", "eol:traitUri": "http://eol.org/resources/976/measurements/m_00269775", "@type": "dwc:MeasurementOrFact", "predicate": "geographic distribution includes", "dwc:measurementType": "http://eol.org/schema/terms/Present", "value": "Chiapas montane forests", "eol:dataPointId": 45346714, "dc:source": "http://www.worldwildlife.org/publications/wildfinder-database", "dc:bibliographicCitation": "World Wildlife Fund. 2006. WildFinder: Online database of species distributions, ver. Jan-06. www.worldwildlife.org/WildFinder", "dwc:measurementValue": "http://eol.org/schema/terms/Chiapas_montane_forests", "dwc:scientificName": "Potos flavus", "dc:contributor": "Compiler: Sarah Miller", "dwc:measurementRemarks": "Biome: Tropical and Subtropical Moist Broadleaf Forests

Realm: Neotropical", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_45346713", "eol:traitUri": "http://eol.org/resources/976/measurements/m_00269774", "@type": "dwc:MeasurementOrFact", "predicate": "geographic distribution includes", "dwc:measurementType": "http://eol.org/schema/terms/Present", "value": "Central American montane forests", "eol:dataPointId": 45346713, "dc:source": "http://www.worldwildlife.org/publications/wildfinder-database", "dc:bibliographicCitation": "World Wildlife Fund. 2006. WildFinder: Online database of species distributions, ver. Jan-06. www.worldwildlife.org/WildFinder", "dwc:measurementValue": "http://eol.org/schema/terms/Central_American_montane_forests", "dwc:scientificName": "Potos flavus", "dc:contributor": "Compiler: Sarah Miller", "dwc:measurementRemarks": "Biome: Tropical and Subtropical Moist Broadleaf Forests

Realm: Neotropical", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_45346712", "eol:traitUri": "http://eol.org/resources/976/measurements/m_00269773", "@type": "dwc:MeasurementOrFact", "predicate": "geographic distribution includes", "dwc:measurementType": "http://eol.org/schema/terms/Present", "value": "Central American Atlantic moist forests", "eol:dataPointId": 45346712, "dc:source": "http://www.worldwildlife.org/publications/wildfinder-database", "dc:bibliographicCitation": "World Wildlife Fund. 2006. WildFinder: Online database of species distributions, ver. Jan-06. www.worldwildlife.org/WildFinder", "dwc:measurementValue": "http://eol.org/schema/terms/Central_American_Atlantic_moist_forests", "dwc:scientificName": "Potos flavus", "dc:contributor": "Compiler: Sarah Miller", "dwc:measurementRemarks": "Biome: Tropical and Subtropical Moist Broadleaf Forests

Realm: Neotropical", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_45346711", "eol:traitUri": "http://eol.org/resources/976/measurements/m_00269772", "@type": "dwc:MeasurementOrFact", "predicate": "geographic distribution includes", "dwc:measurementType": "http://eol.org/schema/terms/Present", "value": "Cauca Valley montane forests", "eol:dataPointId": 45346711, "dc:source": "http://www.worldwildlife.org/publications/wildfinder-database", "dc:bibliographicCitation": "World Wildlife Fund. 2006. WildFinder: Online database of species distributions, ver. Jan-06. www.worldwildlife.org/WildFinder", "dwc:measurementValue": "http://eol.org/schema/terms/Cauca_Valley_montane_forests", "dwc:scientificName": "Potos flavus", "dc:contributor": "Compiler: Sarah Miller", "dwc:measurementRemarks": "Biome: Tropical and Subtropical Moist Broadleaf Forests

Realm: Neotropical", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_45346710", "eol:traitUri": "http://eol.org/resources/976/measurements/m_00269771", "@type": "dwc:MeasurementOrFact", "predicate": "geographic distribution includes", "dwc:measurementType": "http://eol.org/schema/terms/Present", "value": "Catatumbo moist forests", "eol:dataPointId": 45346710, "dc:source": "http://www.worldwildlife.org/publications/wildfinder-database", "dc:bibliographicCitation": "World Wildlife Fund. 2006. WildFinder: Online database of species distributions, ver. Jan-06. www.worldwildlife.org/WildFinder", "dwc:measurementValue": "http://eol.org/schema/terms/Catatumbo_moist_forests", "dwc:scientificName": "Potos flavus", "dc:contributor": "Compiler: Sarah Miller", "dwc:measurementRemarks": "Biome: Tropical and Subtropical Moist Broadleaf Forests

Realm: Neotropical", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_45346709", "eol:traitUri": "http://eol.org/resources/976/measurements/m_00269770", "@type": "dwc:MeasurementOrFact", "predicate": "geographic distribution includes", "dwc:measurementType": "http://eol.org/schema/terms/Present", "value": "Caqueta moist forests", "eol:dataPointId": 45346709, "dc:source": "http://www.worldwildlife.org/publications/wildfinder-database", "dc:bibliographicCitation": "World Wildlife Fund. 2006. WildFinder: Online database of species distributions, ver. Jan-06. www.worldwildlife.org/WildFinder", "dwc:measurementValue": "http://eol.org/schema/terms/Caqueta_moist_forests", "dwc:scientificName": "Potos flavus", "dc:contributor": "Compiler: Sarah Miller", "dwc:measurementRemarks": "Biome: Tropical and Subtropical Moist Broadleaf Forests

Realm: Neotropical", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_45346708", "eol:traitUri": "http://eol.org/resources/976/measurements/m_00269769", "@type": "dwc:MeasurementOrFact", "predicate": "geographic distribution includes", "dwc:measurementType": "http://eol.org/schema/terms/Present", "value": "Caatinga Enclaves moist forests", "eol:dataPointId": 45346708, "dc:source": "http://www.worldwildlife.org/publications/wildfinder-database", "dc:bibliographicCitation": "World Wildlife Fund. 2006. WildFinder: Online database of species distributions, ver. Jan-06. www.worldwildlife.org/WildFinder", "dwc:measurementValue": "http://eol.org/schema/terms/Caatinga_Enclaves_moist_forests", "dwc:scientificName": "Potos flavus", "dc:contributor": "Compiler: Sarah Miller", "dwc:measurementRemarks": "Biome: Tropical and Subtropical Moist Broadleaf Forests

Realm: Neotropical", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_45346707", "eol:traitUri": "http://eol.org/resources/976/measurements/m_00269768", "@type": "dwc:MeasurementOrFact", "predicate": "geographic distribution includes", "dwc:measurementType": "http://eol.org/schema/terms/Present", "value": "Bolivian Yungas", "eol:dataPointId": 45346707, "dc:source": "http://www.worldwildlife.org/publications/wildfinder-database", "dc:bibliographicCitation": "World Wildlife Fund. 2006. WildFinder: Online database of species distributions, ver. Jan-06. www.worldwildlife.org/WildFinder", "dwc:measurementValue": "http://eol.org/schema/terms/Bolivian_Yungas", "dwc:scientificName": "Potos flavus", "dc:contributor": "Compiler: Sarah Miller", "dwc:measurementRemarks": "Biome: Tropical and Subtropical Moist Broadleaf Forests

Realm: Neotropical", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_45346706", "eol:traitUri": "http://eol.org/resources/976/measurements/m_00269767", "@type": "dwc:MeasurementOrFact", "predicate": "geographic distribution includes", "dwc:measurementType": "http://eol.org/schema/terms/Present", "value": "Bahia interior forests", "eol:dataPointId": 45346706, "dc:source": "http://www.worldwildlife.org/publications/wildfinder-database", "dc:bibliographicCitation": "World Wildlife Fund. 2006. WildFinder: Online database of species distributions, ver. Jan-06. www.worldwildlife.org/WildFinder", "dwc:measurementValue": "http://eol.org/schema/terms/Bahia_interior_forests", "dwc:scientificName": "Potos flavus", "dc:contributor": "Compiler: Sarah Miller", "dwc:measurementRemarks": "Biome: Tropical and Subtropical Moist Broadleaf Forests

Realm: Neotropical", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_45346705", "eol:traitUri": "http://eol.org/resources/976/measurements/m_00269766", "@type": "dwc:MeasurementOrFact", "predicate": "geographic distribution includes", "dwc:measurementType": "http://eol.org/schema/terms/Present", "value": "Bahia coastal forests", "eol:dataPointId": 45346705, "dc:source": "http://www.worldwildlife.org/publications/wildfinder-database", "dc:bibliographicCitation": "World Wildlife Fund. 2006. WildFinder: Online database of species distributions, ver. Jan-06. www.worldwildlife.org/WildFinder", "dwc:measurementValue": "http://eol.org/schema/terms/Bahia_coastal_forests", "dwc:scientificName": "Potos flavus", "dc:contributor": "Compiler: Sarah Miller", "dwc:measurementRemarks": "Biome: Tropical and Subtropical Moist Broadleaf Forests

Realm: Neotropical", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_45346704", "eol:traitUri": "http://eol.org/resources/976/measurements/m_00269765", "@type": "dwc:MeasurementOrFact", "predicate": "geographic distribution includes", "dwc:measurementType": "http://eol.org/schema/terms/Present", "value": "Atlantic Coast restingas", "eol:dataPointId": 45346704, "dc:source": "http://www.worldwildlife.org/publications/wildfinder-database", "dc:bibliographicCitation": "World Wildlife Fund. 2006. WildFinder: Online database of species distributions, ver. Jan-06. www.worldwildlife.org/WildFinder", "dwc:measurementValue": "http://eol.org/schema/terms/Atlantic_Coast_restingas", "dwc:scientificName": "Potos flavus", "dc:contributor": "Compiler: Sarah Miller", "dwc:measurementRemarks": "Biome: Tropical and Subtropical Moist Broadleaf Forests

Realm: Neotropical", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_45346703", "eol:traitUri": "http://eol.org/resources/976/measurements/m_00269764", "@type": "dwc:MeasurementOrFact", "predicate": "geographic distribution includes", "dwc:measurementType": "http://eol.org/schema/terms/Present", "value": "Sierra Madre Oriental pine-oak forests", "eol:dataPointId": 45346703, "dc:source": "http://www.worldwildlife.org/publications/wildfinder-database", "dc:bibliographicCitation": "World Wildlife Fund. 2006. WildFinder: Online database of species distributions, ver. Jan-06. www.worldwildlife.org/WildFinder", "dwc:measurementValue": "http://eol.org/schema/terms/Sierra_Madre_Oriental_pine-oak_forests", "dwc:scientificName": "Potos flavus", "dc:contributor": "Compiler: Sarah Miller", "dwc:measurementRemarks": "Biome: Tropical and Subtropical Coniferous Forests

Realm: Nearctic", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_949466", "eol:traitUri": "http://eol.org/resources/704/measurements/adultheadbodylen500", "@type": "dwc:MeasurementOrFact", "predicate": "body length (VT)", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0001256", "value": "509.54", "units": "mm", "eol:dataPointId": 949466, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Total length from tip of nose to anus or base of tail of adult (or age unspecified) live, freshly-killed, or museum specimens using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. Based on information from primary and secondary literature sources. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "509.54", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000016", "dwc:scientificName": "Potos flavus", "dwc:lifeStage": "http://www.ebi.ac.uk/efo/EFO_0001272" }, { "@id": "http://eol.org/pages/328067/data#data_point_949467", "eol:traitUri": "http://eol.org/resources/704/measurements/dispersalage94", "@type": "dwc:MeasurementOrFact", "predicate": "dispersal age", "dwc:measurementType": "http://eol.org/schema/terms/DispersalAge", "value": "160", "units": "days", "eol:dataPointId": 949467, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Dispersal Age: Age at which young permanently leave the parent, parental group, social group or any associated territories, using non-captive, wild, non-provisioned or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. Based on information from primary and secondary literature sources. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "160", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000033", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949468", "eol:traitUri": "http://eol.org/resources/704/measurements/dietbreadth467", "@type": "dwc:MeasurementOrFact", "predicate": "diet breadth", "dwc:measurementType": "http://eol.org/schema/terms/DietBreadth", "value": "4", "eol:dataPointId": 949468, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Number of dietary categories eaten by each species measured using any qualitative or quantitative dietary measure, over any period of time, using any assessment method, for non-captive or non-provisioned populations; adult or age unspecified individuals, male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. Categories were defined as vertebrate, invertebrate, fruit, flowers/nectar/pollen, leaves/branches/bark, seeds, grass and roots/tubers. Based on information from primary and secondary literature sources. See source for details.", "dwc:measurementValue": "4", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949470", "eol:traitUri": "http://eol.org/resources/704/measurements/ageateyeopening149", "@type": "dwc:MeasurementOrFact", "predicate": "age at eye opening", "dwc:measurementType": "http://eol.org/schema/terms/AgeAtEyeOpening", "value": "16.95", "units": "days", "eol:dataPointId": 949470, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Age at which both eyes are fully open after birth using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. Based on information from primary and secondary literature sources. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "16.95", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000033", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949471", "eol:traitUri": "http://eol.org/resources/704/measurements/homerangeindiv237", "@type": "dwc:MeasurementOrFact", "predicate": "home range", "dwc:measurementType": "http://www.owl-ontologies.com/unnamed.owl#Home_range", "value": "0.21", "units": "km^2", "eol:dataPointId": 949471, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Size of the area within which everyday activities of individuals are typically restricted, estimated by either direct observation, radio telemetry, trapping or unspecified methods over any duration of time, using non-captive populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "0.21", "dwc:measurementUnit": "http://eol.org/schema/terms/squarekilometer", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949472", "eol:traitUri": "http://eol.org/resources/704/measurements/homerange266", "@type": "dwc:MeasurementOrFact", "predicate": "home range", "dwc:measurementType": "http://www.owl-ontologies.com/unnamed.owl#Home_range", "value": "0.22", "units": "km^2", "eol:dataPointId": 949472, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Size of the area within which everyday activities of individuals or groups (of any type) are typically restricted, estimated by either direct observation, radio telemetry, trapping or unspecified methods over any duration of time, using non-captive populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "0.22", "dwc:measurementUnit": "http://eol.org/schema/terms/squarekilometer", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949473", "eol:traitUri": "http://eol.org/resources/704/measurements/habitatbreadth530", "@type": "dwc:MeasurementOrFact", "predicate": "habitat breadth", "dwc:measurementType": "http://eol.org/schema/terms/HabitatBreadth", "value": "2", "eol:dataPointId": 949473, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Number of habitat layers used by each species measured using any qualitative or quantitative time measure, for non-captive populations; adult or age unspecified individuals, male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. Categories were defined as above ground dwelling, aquatic, fossorial and ground dwelling. Based on information from primary and secondary literature sources. See source for details.", "dwc:measurementValue": "2", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949474", "eol:traitUri": "http://eol.org/resources/704/measurements/gestationlen520", "@type": "dwc:MeasurementOrFact", "predicate": "gestation period duration", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0002292", "value": "116.8", "units": "days", "eol:dataPointId": 949474, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Gestation Length: Length of time of non-inactive fetal growth, using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. Gestation was measured between specified start and end points as follows: Start points – conception, fertilization, first observed copulation, fertilization, implantation, laying, palpably pregnant, removal of pouch young, capture (except marsupials) or unspecified. End points – birth, hatching or unspecified. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "116.8", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000033", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949475", "eol:traitUri": "http://eol.org/resources/704/measurements/grarea125", "@type": "dwc:MeasurementOrFact", "predicate": "geographic range (size of area)", "dwc:measurementType": "http://eol.org/schema/terms/GeographicRangeArea", "value": "12770952.51", "units": "km^2", "eol:dataPointId": 949475, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Geographic Range (Area): Digital geographic range maps of all extant, non-marine mammals from Sechrest (2003) were converted to the Wilson and Reeder (2005) taxonomy. These ranges were used to generate measures of geographic range extent and occupancy. Spatial analyses were performed using ArcGIS (version 9.0) (ESRI 2005) for areas and R (R Development Core Team 2005) for geographic coordinates. Area was calculated using the total extent of a species range with a global equal-area projection (Mollweide).", "dwc:measurementValue": "12770952.51", "dwc:measurementUnit": "http://eol.org/schema/terms/squarekilometer", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949476", "eol:traitUri": "http://eol.org/resources/704/measurements/weaningage363", "@type": "dwc:MeasurementOrFact", "predicate": "weaning age", "dwc:measurementType": "http://eol.org/schema/terms/WeaningAge", "value": "109.13", "units": "days", "eol:dataPointId": 949476, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Weaning Age: Age when primary nutritional dependency on the mother ends and independent foraging begins to make a major contribution to the offspring’s energy requirements, measured as either weaning/lactation length, nutritionally independent, first solid food, last observed nursing, age at first flight (bats only), age at pouch exit or length of teat Attachment (marsupials only) or unspecified definition, using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "109.13", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000033", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949477", "eol:traitUri": "http://eol.org/resources/704/measurements/grmidrangelat2607", "@type": "dwc:MeasurementOrFact", "predicate": "latitude", "dwc:measurementType": "http://semanticscience.org/resource/SIO_000319", "value": "0.3", "units": "decimal degrees", "eol:dataPointId": 949477, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Digital geographic range maps of all extant, non-marine mammals from Sechrest (2003) were converted to the Wilson and Reeder (2005) taxonomy. These ranges were used to generate measures of geographic range extent and occupancy. Spatial analyses were performed using ArcGIS (version 9.0) (ESRI 2005) for areas and R (R Development Core Team 2005) for geographic coordinates. Value calculated using a global geographic projection.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001110", "dwc:measurementValue": "0.3", "dwc:measurementUnit": "http://eol.org/schema/terms/decimaldegrees", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949478", "eol:traitUri": "http://eol.org/resources/704/measurements/grminlat3805", "@type": "dwc:MeasurementOrFact", "predicate": "latitude", "dwc:measurementType": "http://semanticscience.org/resource/SIO_000319", "value": "-23.1", "units": "decimal degrees", "eol:dataPointId": 949478, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Digital geographic range maps of all extant, non-marine mammals from Sechrest (2003) were converted to the Wilson and Reeder (2005) taxonomy. These ranges were used to generate measures of geographic range extent and occupancy. Spatial analyses were performed using ArcGIS (version 9.0) (ESRI 2005) for areas and R (R Development Core Team 2005) for geographic coordinates. Value calculated using a global geographic projection.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001113", "dwc:measurementValue": "-23.1", "dwc:measurementUnit": "http://eol.org/schema/terms/decimaldegrees", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949479", "eol:traitUri": "http://eol.org/resources/704/measurements/grmaxlong3243", "@type": "dwc:MeasurementOrFact", "predicate": "longitude", "dwc:measurementType": "http://semanticscience.org/resource/SIO_000318", "value": "-34.79", "units": "decimal degrees", "eol:dataPointId": 949479, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Digital geographic range maps of all extant, non-marine mammals from Sechrest (2003) were converted to the Wilson and Reeder (2005) taxonomy. These ranges were used to generate measures of geographic range extent and occupancy. Spatial analyses were performed using ArcGIS (version 9.0) (ESRI 2005) for areas and R (R Development Core Team 2005) for geographic coordinates. Value calculated using a global geographic projection.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001114", "dwc:measurementValue": "-34.79", "dwc:measurementUnit": "http://eol.org/schema/terms/decimaldegrees", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949480", "eol:traitUri": "http://eol.org/resources/704/measurements/hupopdenmean2854", "@type": "dwc:MeasurementOrFact", "predicate": "human population density", "dwc:measurementType": "http://eol.org/schema/terms/HumanPopulationDensity", "value": "25.77", "units": "individuals per square kilometer", "eol:dataPointId": 949480, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Variables describing the anthropogenic and environmental conditions within the geographic range of a species were generated based on the extent of digital species range maps from Sechrest (2003) converted to the Wilson and Reeder (2005) taxonomy. The species ranges were first gridded at 0.5 degrees using a global geographic projection and species were scored as present in each cell if any of the range intersected that cell. Summary statistics for a species were then calculated by summarizing the value for each anthropogenic and environmental variable (gridded to the same extent) for all the cells the species was present. The summary statistics for each variable was adjusted for the fact that area varies with latitude by multiplying each cell by the area and then dividing by the total area of cells for that variable for a species. Mean Human Population Density calculated using the Gridded Population of the World (GPW) (CIESIN and CIAT 2005) for 1995.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001109", "dwc:measurementValue": "25.77", "dwc:measurementUnit": "http://eol.org/schema/terms/individualspersquarekilometer", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949481", "eol:traitUri": "http://eol.org/resources/704/measurements/aetmean1232", "@type": "dwc:MeasurementOrFact", "predicate": "actual evapotranspiration rate in geographic range", "dwc:measurementType": "http://eol.org/schema/terms/AETinRange", "value": "1306.64", "units": "millimeters per month", "eol:dataPointId": 949481, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Variables describing the environmental conditions within the geographic range of a species were generated based on the extent of digital species range maps from Sechrest (2003) converted to the Wilson and Reeder (2005) taxonomy. The species ranges were first gridded at 0.5 degrees using a global geographic projection and species were scored as present in each cell if any of the range intersected that cell. Summary statistics for a species were then calculated by summarizing the value for each environmental variable (gridded to the same extent) for all the cells the species was present. The summary statistics for each variable was adjusted for the fact that area varies with latitude by multiplying each cell by the area and then dividing by the total area of cells for that variable for a species. Mean Monthly AET from 1920 to 1980 (mm) was calculated using the Global Resource Information Database of UNEP and is available from http://www.grid.unep.ch/data/grid/gnv183.php.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001109", "dwc:measurementValue": "1306.64", "dwc:measurementUnit": "http://eol.org/schema/terms/millimeterspermonth", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949482", "eol:traitUri": "http://eol.org/resources/704/measurements/adultbodymass768", "@type": "dwc:MeasurementOrFact", "predicate": "body mass", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0001259", "value": "2441.81", "units": "g", "eol:dataPointId": 949482, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Mass of adult (or age unspecified) live or freshly-killed specimens (excluding pregnant females) using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. Based on information from primary and secondary literature sources. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "2441.81", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000021", "dwc:scientificName": "Potos flavus", "dwc:lifeStage": "http://www.ebi.ac.uk/efo/EFO_0001272" }, { "@id": "http://eol.org/pages/328067/data#data_point_949491", "eol:traitUri": "http://eol.org/resources/704/measurements/activitycycle556", "@type": "dwc:MeasurementOrFact", "predicate": "behavioral circadian rhythm", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0001502", "value": "nocturnal", "eol:dataPointId": 949491, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Activity cycle of each species measured for non-captive populations; adult or age unspecified individuals, male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. Species were defined as (1) nocturnal only, (2) nocturnal/crepuscular, cathemeral, crepuscular or diurnal/crepuscular and (3) diurnal only. Based on information from primary and secondary literature sources. See source for details.", "dwc:measurementValue": "http://www.owl-ontologies.com/unnamed.owl#Nocturnal", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949483", "eol:traitUri": "http://eol.org/resources/704/measurements/socialgrpsize618", "@type": "dwc:MeasurementOrFact", "predicate": "social group size", "dwc:measurementType": "http://eol.org/schema/terms/SocialGroupSize", "value": "1", "eol:dataPointId": 949483, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Social Group Size: Number of individuals, adults or definition unspecified in a group that spends the majority of their time in a 24 hour cycle together where there is some indication that these individuals form a social cohesive unit, measured over any duration of time, using non-captive populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "1", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949484", "eol:traitUri": "http://eol.org/resources/704/measurements/sexualmaturityage215", "@type": "dwc:MeasurementOrFact", "predicate": "onset of fertility", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0002683", "value": "858.41", "units": "days", "eol:dataPointId": 949484, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Sexual Maturity Age: Age when individuals are first physically capable of reproducing, defined as either physically sexually mature, age at first mating or unspecified (males and females), age at first estrus or age at first pregnancy (females only), age at spermatogenesis or age at testes descent (males only), using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals, primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "858.41", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000033", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949485", "eol:traitUri": "http://eol.org/resources/704/measurements/populationdensity532", "@type": "dwc:MeasurementOrFact", "predicate": "animal population density", "dwc:measurementType": "http://purl.bioontology.org/ontology/CSP/2383-1863", "value": "34.21", "units": "individuals per square kilometer", "eol:dataPointId": 949485, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Population Density: Number of individuals per square kilometer, estimated with either direct, indirect or unspecified counts, measured in any area size within a human, ecological or unspecified boundary, over any duration of time, using non-captive, non-provisioned populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "34.21", "dwc:measurementUnit": "http://eol.org/schema/terms/individualspersquarekilometer", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949486", "eol:traitUri": "http://eol.org/resources/704/measurements/neonateheadbodylen38", "@type": "dwc:MeasurementOrFact", "predicate": "body length (VT)", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0001256", "value": "183.03", "units": "mm", "eol:dataPointId": 949486, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Neonate Head Body Length: Total length from tip of nose to anus or base of tail of live, freshly-killed, or museum specimens of infants at either a near term embryonic stage, birth, immediately after birth or up to an age of seven days after birth, using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "183.03", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000016", "dwc:scientificName": "Potos flavus", "dwc:lifeStage": "http://purl.bioontology.org/ontology/CSP/0070-1441" }, { "@id": "http://eol.org/pages/328067/data#data_point_949487", "eol:traitUri": "http://eol.org/resources/704/measurements/neonatalbodymass321", "@type": "dwc:MeasurementOrFact", "predicate": "body mass", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0001259", "value": "171.84", "units": "g", "eol:dataPointId": 949487, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Neonatal Body Mass: Mass of live or freshly-killed specimens of infants at either a near term embryonic stage, birth, immediately after birth or up to an age of seven days after birth, using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "171.84", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000021", "dwc:scientificName": "Potos flavus", "dwc:lifeStage": "http://purl.bioontology.org/ontology/CSP/0070-1441" }, { "@id": "http://eol.org/pages/328067/data#data_point_949492", "eol:traitUri": "http://eol.org/resources/704/measurements/trophiclevel1154", "@type": "dwc:MeasurementOrFact", "predicate": "trophic level", "dwc:measurementType": "http://eol.org/schema/terms/TrophicLevel", "value": "omnivore", "eol:dataPointId": 949492, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Trophic level of each species measured using any qualitative or quantitative dietary measure, over any period of time, using any assessment method, for non-captive or non-provisioned populations; adult or age unspecified individuals, male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details. Species were defined as (1) http://www.owl-ontologies.com/unnamed.owl#Primary__Herbivore, (2) http://www.owl-ontologies.com/unnamed.owl#Omnivore and (3) http://www.owl-ontologies.com/unnamed.owl#Primary__Carnivore", "dwc:measurementValue": "http://www.owl-ontologies.com/unnamed.owl#Omnivore", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949493", "eol:traitUri": "http://eol.org/resources/704/measurements/terrestriality1036", "@type": "dwc:MeasurementOrFact", "predicate": "terrestriality", "dwc:measurementType": "http://eol.org/schema/terms/Terrestriality", "value": "above ground dwelling", "eol:dataPointId": 949493, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Degree of terrestriality of each species measured using any qualitative or quantitative time measure, for non-captive populations; adult or age unspecified individuals, male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. Species were defined as (1) fossorial and/or ground dwelling only and (2) above ground dwelling. See source for details.", "dwc:measurementValue": "http://eol.org/schema/terms/aboveGroundDwelling", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949494", "eol:traitUri": "http://eol.org/resources/704/measurements/teatnumber630", "@type": "dwc:MeasurementOrFact", "predicate": "teat number", "dwc:measurementType": "http://purl.obolibrary.org/obo/CMO_0000445", "value": "2", "eol:dataPointId": 949494, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Total number of teats present, using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "2", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949495", "eol:traitUri": "http://eol.org/resources/704/measurements/hupopdenchange1541", "@type": "dwc:MeasurementOrFact", "predicate": "human population density change", "dwc:measurementType": "http://eol.org/schema/terms/HumanPopulationDensityChange", "value": "0.12", "eol:dataPointId": 949495, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Variables describing the anthropogenic and environmental conditions within the geographic range of a species were generated based on the extent of digital species range maps from Sechrest (2003) converted to the Wilson and Reeder (2005) taxonomy. The species ranges were first gridded at 0.5 degrees using a global geographic projection and species were scored as present in each cell if any of the range intersected that cell. Summary statistics for a species were then calculated by summarizing the value for each anthropogenic and environmental variable (gridded to the same extent) for all the cells the species was present. The summary statistics for each variable was adjusted for the fact that area varies with latitude by multiplying each cell by the area and then dividing by the total area of cells for that variable for a species. Human Population Density Change calculated using the Gridded Population of the World (GPW) (CIESIN and CIAT 2005) for 1990 and 1995 as: (1995–1990)/1990.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001109", "dwc:measurementValue": "0.12", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949488", "eol:traitUri": "http://eol.org/resources/704/measurements/precipmean1381", "@type": "dwc:MeasurementOrFact", "predicate": "precipitation in geographic range", "dwc:measurementType": "http://eol.org/schema/terms/PrecipitationInRange", "value": "153.67", "units": "millimeters per month", "eol:dataPointId": 949488, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Variables describing the environmental conditions within the geographic range of a species were generated based on the extent of digital species range maps from Sechrest (2003) converted to the Wilson and Reeder (2005) taxonomy. The species ranges were first gridded at 0.5 degrees using a global geographic projection and species were scored as present in each cell if any of the range intersected that cell. Summary statistics for a species were then calculated by summarizing the value for each environmental variable (gridded to the same extent) for all the cells the species was present. The summary statistics for each variable was adjusted for the fact that area varies with latitude by multiplying each cell by the area and then dividing by the total area of cells for that variable for a species. Mean Monthly Precipitation was calculated using data from ftp://ftp.ngdc.noaa.gov/Solid_Earth/Ecosystems/GEDII_a/datasets/a03/lc.htm", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001109", "dwc:measurementValue": "153.67", "dwc:measurementUnit": "http://eol.org/schema/terms/millimeterspermonth", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949489", "eol:traitUri": "http://eol.org/resources/704/measurements/tempmean1181", "@type": "dwc:MeasurementOrFact", "predicate": "temperature in geographic range", "dwc:measurementType": "http://eol.org/schema/terms/TemperatureInRange", "value": "241.49", "units": "0.1°C", "eol:dataPointId": 949489, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Variables describing the environmental conditions within the geographic range of a species were generated based on the extent of digital species range maps from Sechrest (2003) converted to the Wilson and Reeder (2005) taxonomy. The species ranges were first gridded at 0.5 degrees using a global geographic projection and species were scored as present in each cell if any of the range intersected that cell. Summary statistics for a species were then calculated by summarizing the value for each environmental variable (gridded to the same extent) for all the cells the species was present. The summary statistics for each variable was adjusted for the fact that area varies with latitude by multiplying each cell by the area and then dividing by the total area of cells for that variable for a species. Mean Monthly Temperature was calculated using data from ftp://ftp.ngdc.noaa.gov/Solid_Earth/Ecosystems/GEDII_a/datasets/a03/lc.htm", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001109", "dwc:measurementValue": "241.49", "dwc:measurementUnit": "http://eol.org/schema/terms/onetenthdegreescelsius", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949490", "eol:traitUri": "http://eol.org/resources/704/measurements/petmean1637", "@type": "dwc:MeasurementOrFact", "predicate": "potential evapotranspiration rate in geographic range", "dwc:measurementType": "http://eol.org/schema/terms/PETinRange", "value": "1552.99", "units": "millimeters per month", "eol:dataPointId": 949490, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Variables describing the environmental conditions within the geographic range of a species were generated based on the extent of digital species range maps from Sechrest (2003) converted to the Wilson and Reeder (2005) taxonomy. The species ranges were first gridded at 0.5 degrees using a global geographic projection and species were scored as present in each cell if any of the range intersected that cell. Summary statistics for a species were then calculated by summarizing the value for each environmental variable (gridded to the same extent) for all the cells the species was present. The summary statistics for each variable was adjusted for the fact that area varies with latitude by multiplying each cell by the area and then dividing by the total area of cells for that variable for a species. Mean Monthly PET from 1920 to 1980 (mm) was calculated using the Global Resource Information Database of UNEP and is available from http://www.grid.unep.ch/data/grid/gnv183.php.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001109", "dwc:measurementValue": "1552.99", "dwc:measurementUnit": "http://eol.org/schema/terms/millimeterspermonth", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_3088883", "eol:traitUri": "http://eol.org/resources/691/measurements/69d7a1a9ffaff268e9c33532e53b703d", "@type": "dwc:MeasurementOrFact", "predicate": "total life span", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0001661", "value": "38.4", "units": "years", "eol:dataPointId": 3088883, "dc:source": "http://eol.org/resources/691", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001114", "dwc:measurementValue": "38.4", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000036", "dwc:establishmentMeans": "captivity", "dwc:scientificName": "Potos flavus", "dwc:measurementRemarks": "Confidence in the longevity data (data quality) is classified as: 'low' (only used for species without an established maximum longevity in AnAge), 'questionable', 'acceptable' and 'high'. This qualifier is based on the reliability of the original reference from which maximum longevity was obtained, sample size, whether a given species has been studied and reproduces in captivity, and whether there are any conflicting reports.", "http://purl.bioontology.org/ontology/CSP/5004-0024": "acceptable", "eolterms:SampleSize": "medium (100-1000)" }, { "@id": "http://eol.org/pages/328067/data#data_point_3088886", "eol:traitUri": "http://eol.org/resources/691/measurements/5db8448e3c63697d1fc9c7fe858fcb6e", "@type": "dwc:MeasurementOrFact", "predicate": "inter-birth interval", "dwc:measurementType": "http://eol.org/schema/terms/InterBirthInterval", "value": "365", "units": "days", "eol:dataPointId": 3088886, "dc:source": "http://eol.org/resources/691", "dwc:measurementValue": "365", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000033", "dwc:scientificName": "Potos flavus", "dwc:measurementRemarks": "Life history data based on reviews and large-scale datasets, see source for details." }, { "@id": "http://eol.org/pages/328067/data#data_point_3088887", "eol:traitUri": "http://eol.org/resources/691/measurements/0f71656d0cadba03f37cfd2a6b7244a0", "@type": "dwc:MeasurementOrFact", "predicate": "prenatal development duration", "dwc:measurementType": "http://eol.org/schema/terms/PrenatalDevelopmentDuration", "value": "115", "units": "days", "eol:dataPointId": 3088887, "dc:source": "http://eol.org/resources/691", "dwc:measurementValue": "115", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000033", "dwc:scientificName": "Potos flavus", "dwc:measurementRemarks": "Life history data based on reviews and large-scale datasets, see source for details." }, { "@id": "http://eol.org/pages/328067/data#data_point_3088888", "eol:traitUri": "http://eol.org/resources/691/measurements/f8277fc9a1f3d10916edfd5cffeffdc0", "@type": "dwc:MeasurementOrFact", "predicate": "growth rate", "dwc:measurementType": "http://purl.bioontology.org/ontology/SNOMEDCT/260865002", "value": "0.0102", "units": "per day", "eol:dataPointId": 3088888, "dc:source": "http://eol.org/resources/691", "dwc:measurementMethod": "Growth rate values represent postnatal growth rate and are expressed in days^-1. They were calculated by fitting empirical data taken from published growth curves to sigmoidal growth functions and are considered appropriate for comparative analyses within the same taxonomic class. Please be aware, however, that growth rates for mammals were derived from the Gompertz function while growth rates for birds were derived from the logistic function, so comparisons between the two classes need to take this into account.", "dwc:measurementValue": "0.0102", "dwc:measurementUnit": "http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C66968", "dwc:scientificName": "Potos flavus", "dwc:measurementRemarks": "Life history data based on reviews and large-scale datasets, see source for details." }, { "@id": "http://eol.org/pages/328067/data#data_point_3088890", "eol:traitUri": "http://eol.org/resources/691/measurements/574019b2a04efde1bc240b5ee4734607", "@type": "dwc:MeasurementOrFact", "predicate": "litters per year", "dwc:measurementType": "http://eol.org/schema/terms/LittersPerYear", "value": "1", "units": "per year", "eol:dataPointId": 3088890, "dc:source": "http://eol.org/resources/691", "dwc:measurementValue": "1", "dwc:measurementUnit": 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Morgan Ernest. 2003. Life history characteristics of placental non-volant mammals. Ecology 84:3402.", "dwc:measurementMethod": "Average number of live offspring produced in one litter", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "1", "dwc:scientificName": "Potos flavus", "eolterms:resource": "http://eol.org/resources/1020" }, { "@id": "http://eol.org/pages/328067/data#data_point_46326558", "eol:traitUri": "http://eol.org/resources/1020/measurements/m_04401", "@type": "dwc:MeasurementOrFact", "predicate": "life span", "dwc:measurementType": "http://purl.obolibrary.org/obo/PATO_0000050", "value": "384", "units": "months", "eol:dataPointId": 46326558, "eol:reference/full_reference": "Eisenberg, J. F. 1989. Mammals of the Neotropics. Vol. 1. University of Chicago Press, Chicago, Illinois, USA.", "dc:bibliographicCitation": "S. K. Morgan Ernest. 2003. Life history characteristics of placental non-volant mammals. Ecology 84:3402.", "dwc:measurementMethod": "Maximum length of time a member of either sex has been observed to live", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001114", "dwc:measurementValue": "384", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000035", "dwc:scientificName": "Potos flavus", "eolterms:resource": "http://eol.org/resources/1020" }, { "@id": "http://eol.org/pages/328067/data#data_point_46325754", "eol:traitUri": "http://eol.org/resources/1020/measurements/m_03597", "@type": "dwc:MeasurementOrFact", "predicate": "age at first reproduction", "dwc:measurementType": "http://polytraits.lifewatchgreece.eu/terms/MAT", "value": "27.65", "units": "months", "eol:dataPointId": 46325754, "eol:reference/full_reference": "Eisenberg, J. F. 1989. Mammals of the Neotropics. Vol. 1. University of Chicago Press, Chicago, Illinois, USA.", "dc:bibliographicCitation": "S. K. Morgan Ernest. 2003. Life history characteristics of placental non-volant mammals. Ecology 84:3402.", "dwc:measurementMethod": "Average age when female typically conceives her first offspring", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "27.65", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000035", "dwc:scientificName": "Potos flavus", "eolterms:resource": "http://eol.org/resources/1020" }, { "@id": "http://eol.org/pages/328067/data#data_point_44919889", "eol:traitUri": "http://eol.org/resources/1004/measurements/m3776", "@type": "dwc:MeasurementOrFact", "predicate": "trophic level", "dwc:measurementType": "http://www.wikidata.org/entity/Q1053008", "value": "omnivore", "eol:dataPointId": 44919889, "dc:source": "Kissling WD, Dalby L, Fløjgaard C, Lenoir J, Sandel B, Sandom C, Trøjelsgaard K, Svenning J-C (2014) Data from: Establishing macroecological trait datasets: digitalization, extrapolation, and validation of diet preferences in terrestrial mammals worldwide. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.6cd0v", "eol:reference/full_reference": "Nowak, R. M. 1999. Walker’s mammals of the world. Volume 1 & 2. Johns Hopkins University Press, Baltimore.", "dc:bibliographicCitation": "Kissling, W.D., Dalby, L., Fløjgaard, C., Lenoir, J., Sandel., B., Sandom, C., Trøjelsgaard, K. & Svenning, J.-C.: Establishing macroecological trait datasets: digitalization, extrapolation, and validation of diet preferences in terrestrial mammals worldwide. Ecology and Evolution DOI: 10.1002/ece3.1136", "dwc:measurementValue": "http://www.wikidata.org/entity/Q164509", "dwc:scientificName": "Potos flavus", "eolterms:resource": "http://eol.org/resources/1004" }, { "@id": "http://eol.org/pages/328067/data#data_point_44926239", "eol:traitUri": "http://eol.org/resources/1004/measurements/m10127", "@type": "dwc:MeasurementOrFact", "predicate": "diet includes", "dwc:measurementType": "http://eol.org/schema/terms/Diet", "value": "vertebrates", "eol:dataPointId": 44926239, "dc:source": "Kissling WD, Dalby L, Fløjgaard C, Lenoir J, Sandel B, Sandom C, Trøjelsgaard K, Svenning J-C (2014) Data from: Establishing macroecological trait datasets: digitalization, extrapolation, and validation of diet preferences in terrestrial mammals worldwide. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.6cd0v", "eol:reference/full_reference": "Nowak, R. M. 1999. Walker’s mammals of the world. Volume 1 & 2. Johns Hopkins University Press, Baltimore.", "dc:bibliographicCitation": "Kissling, W.D., Dalby, L., Fløjgaard, C., Lenoir, J., Sandel., B., Sandom, C., Trøjelsgaard, K. & Svenning, J.-C.: Establishing macroecological trait datasets: digitalization, extrapolation, and validation of diet preferences in terrestrial mammals worldwide. Ecology and Evolution DOI: 10.1002/ece3.1136", "dwc:measurementMethod": "#REF!#REF!#REF!#REF!", "dwc:measurementValue": "http://eol.org/schema/terms/vertebrate", "dwc:scientificName": "Potos flavus", "eolterms:resource": "http://eol.org/resources/1004" }, { "@id": "http://eol.org/pages/328067/data#data_point_44934780", "eol:traitUri": "http://eol.org/resources/1004/measurements/m18668", "@type": "dwc:MeasurementOrFact", "predicate": "primary diet", "dwc:measurementType": "http://eol.org/schema/terms/PrimaryDiet", "value": "plants", "eol:dataPointId": 44934780, "dc:source": "Kissling WD, Dalby L, Fløjgaard C, Lenoir J, Sandel B, Sandom C, Trøjelsgaard K, Svenning J-C (2014) Data from: Establishing macroecological trait datasets: digitalization, extrapolation, and validation of diet preferences in terrestrial mammals worldwide. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.6cd0v", "eol:reference/full_reference": "Nowak, R. M. 1999. Walker’s mammals of the world. Volume 1 & 2. Johns Hopkins University Press, Baltimore.", "dc:bibliographicCitation": "Kissling, W.D., Dalby, L., Fløjgaard, C., Lenoir, J., Sandel., B., Sandom, C., Trøjelsgaard, K. & Svenning, J.-C.: Establishing macroecological trait datasets: digitalization, extrapolation, and validation of diet preferences in terrestrial mammals worldwide. Ecology and Evolution DOI: 10.1002/ece3.1136", "dwc:measurementMethod": "#REF!#REF!#REF!#REF!", "dwc:measurementValue": "http://eol.org/schema/terms/plant", "dwc:scientificName": "Potos flavus", "eolterms:resource": "http://eol.org/resources/1004" }, { "@id": "http://eol.org/pages/328067/data#data_point_44893421", "eol:traitUri": "http://eol.org/resources/1003/measurements/m3776", "@type": "dwc:MeasurementOrFact", "predicate": "Q1056783", "dwc:measurementType": "http://www.wikidata.org/entity/Q1056783", "value": "omnivore", "eol:dataPointId": 44893421, "dc:source": "Kissling WD, Dalby L, Fløjgaard C, Lenoir J, Sandel B, Sandom C, Trøjelsgaard K, Svenning J-C (2014) Data from: Establishing macroecological trait datasets: digitalization, extrapolation, and validation of diet preferences in terrestrial mammals worldwide. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.6cd0v", "eol:reference/full_reference": "Nowak, R. M. 1999. Walker’s mammals of the world. Volume 1 & 2. Johns Hopkins University Press, Baltimore.", "dc:bibliographicCitation": "Kissling, W.D., Dalby, L., Fløjgaard, C., Lenoir, J., Sandel., B., Sandom, C., Trøjelsgaard, K. & Svenning, J.-C.: Establishing macroecological trait datasets: digitalization, extrapolation, and validation of diet preferences in terrestrial mammals worldwide. Ecology and Evolution DOI: 10.1002/ece3.1136.", "dwc:measurementValue": "http://www.wikidata.org/entity/Q164509", "dwc:scientificName": "Potos flavus", "eolterms:resource": "http://eol.org/resources/1003" } ] } }

If I paste this into the JSON-LD playground and try and convert it to N-Quads I get a flurry of errors. Here are some of the problems (see also EOL JSON-LD not valid #352:

The @id for the EOL taxon is a number instead of a URI

The field "@id": 328067 should be "@id": "http://eol.org/pages/328067". Identifiers on the Semantic Web are URIs not numbers.

Vernacular names can't have additional fields

EOL sometimes indicates the preferred vernacular name like this:
      {
        "@language": "es",
        "@value": "Ak' a' mash",
        "gbif:isPreferredName": true
      },
This is not valid syntax and breaks RDF parsers.

URIs as strings

In several places EOL outputs URIs as simple strings rather than as URIs. For example, to indicate that the parent taxon of Potos flavus is the genus Potos the JSON-LD has:
"dwc:parentNameUsageID": "http://eol.org/pages/14191",
But this is simply saying that the string value for "dwc:parentNameUsageID" is "http://eol.org/pages/14191". In JSON-LD this should be:

"dwc:parentNameUsageID":{"@id":"http:\/\/eol.org\/pages\/14191"}

This syntax ensures that http://eol.org/pages/14191 is interpreted as a URI, which also means clients "know" that they can resolve that URI to get more information.

Predicates with missing (hence wrong) namespace

A number of predicates in the JSON-LD don't have a namespace specified, hence they default to being part of the schema.org vocabulary. For example, this statement:

"scientificName": "Potos flavus (Schreber, 1774)",

results in "scientificName" being interpreted as "http://schema.org/scientificName" (because "http://schema.org/" is set as the default @vocab). This is incorrect, "scientificName" should be "dwc:scientificName".

Then there are predicates such as "predicate" and "value" in the data sections that missing the correct namespace (in this case http://www.w3.org/1999/02/22-rdf-syntax-ns#). For example,

{ "@id": "http://eol.org/pages/328067/data#data_point_46140963", "eol:traitUri": "http://eol.org/resources/737/measurements/e5775a49cc4bbe3f3ae5c391776a467a", "@type": "dwc:MeasurementOrFact", "predicate": "population trend", "dwc:measurementType": "http://iucn.org/population_trend", "value": "Decreasing", "eol:dataPointId": 46140963, "dc:source": "http://eol.org/resources/737", "dwc:measurementValue": "Decreasing", "dwc:scientificName": "Potos flavus (Schreber, 1774)", "eolterms:resource": "http://eol.org/resources/737" }
(This example also has URIs as dumb strings, not as URIs).

Anyone constructing, say, SPARQL queries on this data is going to be using terms such as predicate that don't exist.

Some data records have the predicate "units" - I haven't yet figured out what, if any, vocabulary that predicate comes from.

Summary

I think TraitBank has a lot of potential, and welcome the use of JSON-LD and the schema.org vocabulary. These are both steps forward in the goal of interoperable biodiversity data. But this data will only become interoperable if we take care to ensure that the data we output is what we say it is. EOL TraitBank JSON-LD isn't valid JSON-LD. This also illustrates a bigger problem, we are continually building systems that don't have users. If anyone was using TraitBank JSON-LD with standard Semantic Web clients, they would be up in arms about this. The best way to avoid these situations is for the developers to be users as well (see GBIF, biodiversity informatics and the "platform rant"). Until we "dog food" our own services we will continue to produce data and services that are less than useful. If EOL was itself built on TraitBank, I doubt we'd have these problems.

Friday, September 30, 2016

Guest post: It's 2016 and your data aren't UTF-8 encoded?

Bob mesibov The following is a guest post by Bob Mesibov.

According to w3techs, seven out of every eight websites in the Alexa top 10 million are UTF-8 encoded. This is good news for us screenscrapers, because it means that when we scrape data into a UTF-8 encoded document, the chances are good that all the characters will be correctly encoded and displayed.

It's not quite good news for two reasons.

In the first place, one out of eight websites is encoded with some feeble default like ISO-8859-1, which supports even fewer characters than the closely related windows-1252. Those sites will lose some widely-used punctuation when read as UTF-8, unless the webpage has been carefully composed with the HTML equivalents of those characters. You're usually safe (but see below) with big online sources like Atlas of Living Australia (ALA), APNI, CoL, EoL, GBIF, IPNI, IRMNG, NCBI Taxonomy, The Plant List and WoRMS, because these declare a UTF-8 charset in a meta tag in webpage heads. (IPNI's home page is actually in ISO-8859-1, but its search results are served as UTF-8 encoded XML.)

But a second problem is that just because a webpage declares itself to be UTF-8, that doesn't mean every character on the page sings from the Unicode songbook. Very odd characters may have been pulled from a database and written onto the page as-is. In ALA I recently found an ancient rune — the High Octet Preset control character (HOP, hex 81):

http://biocache.ala.org.au/occurrences/6191ca90-873b-44f8-848d-befc29ad7513 http://biocache.ala.org.au/occurrences/5077df1f-b70a-465b-b22b-c8587a9fb626

HOP replaces ü on these pages and is invisible in your browser, but a screenscrape will capture the HOP and put SchHOPrhoff in your UTF-8 document.

Another example of ALA's fidelity to its sources is its coding of the degree symbol, which is a single-byte character (hex b0) in windows-1252, e.g. in Excel spreadsheets, but a two-byte character (hex c2 b0) in Unicode. In this record, for example:

http://biocache.ala.org.au/occurrences/5e3a2e05-1e80-4e1c-9394-ed6b37441b20

the lat/lon was supplied (says ALA) as 37°56'9.10"S 145° 0'43.74"E. Or was it? The lat/lon could have started out as 37°56'9.10"S 145°0'43.74"E in UTF-8. Somewhere along the line the lat/lon was converted to windows-1252 and the ° characters were generated, resulting in geospatial gibberish.

When a program fails to understand a character's encoding, it usually replaces the mystery character with a ?. A question mark is a perfectly valid character in commonly used encodings, which means the interpretation failure gets propagated through all future re-uses of the text, both on the Web and in data dumps. For example,

http://biocache.ala.org.au/occurrences/dfbbc42d-a422-47a2-9c1d-3d8e137687e4

gives N?crophores for Nécrophores. The history of that particular character failure has been lost downstream, as is the case for myriads of other question marks in online biodiversity data.

In my experience, the situation is much worse in data dumps from online sources. It's a challenge to find a dump without question marks acting as replacement characters. Many of these question marks appear in author and place names. Taxonomists with eastern European names seem to fare particularly badly, sometimes with more than one character variant appearing in the same record, as in the Australian Faunal Directory (AFD) offering of Wêgrzynowicz, W?grzynowicz and Węgrzynowicz for the same coleopterist. Question marks also frequently replace punctuation, such as n-dashes, smart quotes and apostrophes (e.g. O?Brien (CoL) and L?Échange and d?Urville (AFD)).

Character encoding issues create major headaches for data users. It would be a great service to biodiversity informatics if data managers compiled their data in UTF-8 encoding or took the time to convert to UTF-8 and fix any resulting errors before publishing to the Web or uploading to aggregators.

This may be a big ask, given that at least one data manager I've talked to had no idea how characters were encoded in the institution's database. But as ALA's Miles Nicholls wrote back in 2009, "Note that data should always be shared using UTF-8 as the character encoding". Biodiversity informatics is a global discipline and UTF-8 is the global standard for encoding.

Readers needing some background on character encoding will find this and especially this helpful, and a very useful tool to check for encoding problems in small blocks of text is here.

GBIF 2016 Ebbe Nielsen Challenge entries

The GBIF 2016 Ebbe Nielsen Challenge has received 15 submissions. You can view them here: Screenshot 2016 09 30 14 01 05 Unlike last year where the topic was completely open, for the second challenge we've narrowed the focus to "Analysing and addressing gaps and biases in primary biodiversity data". As with last year, judging is limited to the jury (of which I'm a member), however anyone interested in biodiversity informatics can browse the submissions. Although you can't leave comments directly on the submissions within the GBIF Challenge pages, each submission also appears on the portfolio page of the person/organisation that created the entry, so you can leave comments there (follow the link at the bottom of the page for each submission to see it on the portfolio page).

Wednesday, September 07, 2016

Guest post: Absorbing task or deranged quest: an attempt to track all genus names ever published

YtNkVT2U This guest post by Tony Rees describes his quest to track all genus names ever published (plus a subset of the species…).

A “holy grail” for biodiversity informatics is a suitably quality controlled, human- and machine-queryable list of all the world’s species, preferably arranged in a suitable taxonomic hierarchy such as kingdom-phylum-class-order-family-genus or other. To make it truly comprehensive we need fossils as well as extant taxa (dinosaurs as well as dinoflagellates) and to cover all groups from viruses to vertebrates (possibly prions as well, which are, well, virus-like). Linnaeus had some pretty good attempts in his day, and in the internet age the challenge has been taken up by a succession of projects such as the “NODC Taxonomic Code” (a precursor to ITIS, the Integrated Taxonomic Information System - currently 722,000 scientific names), the Species 2000 consortium, and the combined ITIS+SP2000 product “Catalogue of Life”, now in its 16th annual edition, with current holdings of 1,635,250 living and 5,719 extinct valid (“accepted”) species, plus an additional 1,460,644 synonyms (information from http://www.catalogueoflife.org/annual-checklist/2016/info/ac). This looks pretty good until one realises that as well as the estimated “target” of 1.9 million valid extant species there are probably a further 200,000-300,000 described fossils, all with maybe as many synonyms again, making a grand total of at least 5 million published species names to acquire into a central “quality assured” system, a task which will take some time yet.

Ten years ago, in 2006, the author participated in a regular meeting of the steering committee for OBIS, the Ocean Biogeographic Information System which, like GBIF, aggregates species distribution data (for marine species in this context) from multiple providers into a single central search point. OBIS was using the Catalogue of Life (CoL) as its “taxonomic backbone” (method for organising its data holdings) and, again like GBIF, had come up against the problem of what to do with names not recognised in the then-latest edition of CoL, which was at the time less than 50% complete (information on 884,552 species). A solution occurred to me that since genus names are maybe only 10% as numerous as species names, and every species name includes its containing genus as the first portion of its binomial name (thanks, Linnaeus!), an all-genera index might be a tractable task (within a reasonable time frame) where an all-species index was not, and still be useful for allocating incoming “not previously seen” species names to an appropriate position in the taxonomic hierarchy. OBIS, in particular, also wished to know if species (or more exactly, their parent genera) were marine (to be displayed) or nonmarine (hide), similar with extant versus fossil taxa. Sensing a challenge, I offered to produce such a list, in my mind estimating that it might require 3 months full-time, or the equivalent 6 months in part time effort to complete and supply back to OBIS for their use.

To cut a long story short… the project, which I christened the Interim Register of Marine and Nonmarine Genera or IRMNG (originally at CSIRO in Australia, now hosted on its own domain “www.irmng.org” and located at VLIZ in Belgium) has successfully acquired over 480,000 published genus names, including valid names, synonyms and a subset of published misspellings, all allocated to families (most) or higher ranks (remainder) in an internally coherent taxonomic structure, most with marine/nonmarine and extant/fossil flags, all with the source from which I acquired them, sources for the flags, and more; also for perhaps 50% of genera, lists of associated species from wherever it has been convenient to acquire them (Catalogue of Life 2006 being a major source, but many others also used). My estimated 6 months has turned into 10 years and counting, but I do figure that the bulk of the basic “names acquisition” has been done for all groups (my estimate: over 95% complete) and it is rare (although not completely unknown) for me to come across genus names not yet held, at least for the period 1753-2014 which is the present coverage of IRMNG; present effort is therefore concentrated on correcting internal errors and inconsistencies, and upgrading the taxonomic placement (to family) for the around 100,000 names where this is not yet held (also establishing the valid name/synonym status of a similar number of presently “unresolved” generic names).

With the move of the system from Australia to VLIZ, completed within the last couple of months, there is the facility to utilise all of the software and features presently developed at VLIZ that currently runs WoRMS, the World Register of Marine Species and its many associated subsidiary databases, as well as (potentially) look at forming a distributed editing network for IRMNG in the future, as already is the case for WoRMS, presuming that others are see a value in maintaining IRMNG as a useful resource e.g. for taxonomic name resolution, detection of potential homonyms both within and across kingdoms, and generally acting as a hierarchical view of “all life” to at least genus level. A recently implemented addition to IRMNG is to hold ION identifiers (also used in BioNames), for the subset of names where ION holds the original publication details, enabling “deep links” to both ION and BioNames wherein the original publication can often be displayed, as previously described elsewhere in this Blog. Similar identifiers for plants are not yet held in the system but could be, (for example Index Fungorum identifiers for fungi), for cases where the potential linked system adds value in giving, for example, original publication details and onward links to the primary literature.

All in all I feel that the exercise has been of value not only to OBIS (the original “client”) but also to other informatics systems such as GBIF, Encyclopedia of Life, Atlas of Living Australia, Open Tree of Life and others who have all taken advantage of IRMNG data to add to their systems, either for the marine/nonmarine and extant/fossil flags or as an addition to their primary taxonomic backbones, or both. In addition it has allowed myself, the founding IRMNG compiler, to “scratch the taxonomic itch” and finally flesh out what is meant by statements that a certain group contains x families or y genera, and what these actually might be. Finally, many users of the system via its web interface have commented over time on how useful it is to be able to input “any” name, known or unknown, with a good chance that IRMNG can tell them something about the genus (or genus possible options, in the case of homonyms) as well as the species, in many cases, as well as discriminate extant from fossil taxon names, something not yet offered to any significant extent by the current Catalogue of Life.

Readers of iPhylo are encouraged to try IRMNG as a “taxonomic name resolution service” by visiting www.irmng.org and of course, welcome to contact me with suggestions of missed names (concentrating at genus level at the present time) or any other ideas for improvement (which I can then submit for consideration to the team at VLIZ who now provide the technical support for the system).

Tuesday, August 30, 2016

GRBio: A Call for Community Curation - what community?

Singlefig 98253 jpg David Schindel and colleagues recently published a paper in the Biodiversity Data Journal:

Schindel, D., Miller, S., Trizna, M., Graham, E., & Crane, A. (2016, August 26). The Global Registry of Biodiversity Repositories: A Call for Community Curation. BDJ. Pensoft Publishers. http://doi.org/10.3897/bdj.4.e10293

The paper is a call for the community to help grow a database (GRBio) on biodiversity repositories, a database that will "will require community input and curation".

Reading this, I'm struck by the lack of a clear sense of what that community might be. In particular: who is this database for, and who is most likely to build it? I suspect that these are two different sets of people.

Who is it for?

It strikes me that the primary target for GrBio is people who care about cleaning up and linking data. This is very small set of people. While cleaned data is nice, and cleaned and linked data is great, by itself it's not much use until it finds its way into useful tools. Why would taxonomists, curators, and other people working with biodiversity data care about GrBio? What can it give them? Ultimately, we'd like things such as the ability to find any specimen in the world online using simply it's museum collection code. We'd like to track usage of that code in other databases, such as GenBank and BOLD, and in the primary literature. These are all nice things, but they won't happen simply because we have a curated list of natural history collections.

Who will curate it?

Arguably there are only two active communities who care about the contents of GrBio on a scale to actually contribute. One is GBIF, which is building its own registry of collections as more and more natural history collections move their collections online. GBIF's registry is primarily for digital access points to collection data, which don't necessarily readily map to physical collections listed by GrBio. If GrBo is to be relevant, it needs to have mappings between its data and GBIF.

But the community that I suspect will really care about this, to the point that they'd actively engage in editing the data, is not the biodiversity community. Rather, it's people who edit Wikipedia and Wikidata.

I was at one of the GrBio workshops and gave a short presentation, which included this slide:

If you search for a major museum on Google, on the right you will often see a rich "knowledge panel" giving much of the information that GrBio wants to capture (museum name, location, etc.), often with a link to the Wikipedia page for that institution (see http://g.co/kg/m/01t372 for a detailed view of the knowledge panel for the NHM). GrBio can't compete with Wikipedia for richness of content (just think of all the Wikipedia pages in languages other than English). Google's database is mostly hidden, but we can get some of the same data from Wikidata, e.g. the Natural History Museum is entity Q309388 on Wikidata.

From my perspective, the smart move to make is not to appeal to an overstretched community of biodiversity researchers, many of whom are suffering from "project fatigue" as yet more acronyms compete for their attention. Instead, position the project as adding to the already existing database of natural history institutions that is growing in Wikidata. GrBio could either link to Wikidata and Wikipedia pages for institutions, or simply move it's data editing efforts to Wikidata and have GrBio be (at most) a search interface to that data. The notion of having a separate database for the world's collections might not be the best way to achieve GrBio's goals. A lot of people involved in both Wikipedia and Wikidata care about cultural institutions (of which natural history museums and herbaria are examples), those are the people GrBio should be engaging with.

Friday, August 26, 2016

Displaying original species descriptions in BioNames

B8e253dc3be3d84f2c69c51b0af86c03 400x400The goal of my BioNames project is to link every taxonomic name to its original description (initially focussing on animal names). The rationale is that taxonomy is based on evidence, and yet most of this evidence is buried in a non-digitised and/or hard to find literature. Surfacing this information not only makes taxonomic evidence accessible (see Surfacing the deep data of taxonomy), it also surfaces a lot of basic biological information. In many cases the original taxonomic description will be an important source of information about what a species looks like, where it lives, and what it does.

To date I've focussed on linking names to publications, such as articles, on the grounds that this is the unit of citation in science. It's also the unit most often digitised and assigned an identifier, such as a DOI. But often taxonomists cite not an article but the individual page on which the description appears. In web-speak, taxonomists cite "fragment identifiers". Page-level identifiers are not often encountered in the digital world, in part because many digital representations don't have "pages". But this doesn't mean that we can't have identifiers for parts of an article, for example in Fragment Identifiers and DOIs Martin Fenner gives examples of ways to link to specific parts of an online article. His examples work if the article is displayed as HTML. If we are working with XML (say, for a journal published by Pensoft), then we can use XPath to refer to sections of a document. Ultimately it would be nice to have stable identifiers for document fragments linked to taxonomic names, so that we can readily go from name to description (even better if that description was in machine-readable form). You could think of these as locators for "taxonomic treatments", e.g. Miller et al. 2015.

As a quick and dirty approach to this I've reworked BioNames to be able to show the page where a species name is first published. This only works if a number of conditions are met:

  • The BioName database has the page number ("micro reference") for the name.
  • BioNames has the full text for the article, either from BioStor or a PDF.
  • The taxonomic name has been found in that text (e.g., by the Global Names GNRD service).

If these conditions are met, then BioNames will display the page, like this example (Belobranchus segura Keith, Hadiaty & Lord 2012: Screenshot 2016 08 26 16 13 50

Both the page image and OCR text (if available) are displayed. This is a first step towards (a) making stable identifiers available for these pages, and (b) making the text accessible for machine reading.

For some more examples, try Heterophasia melanoleuca kingi Eames 2002 (bird), Echinoparyphium anatis Fischthal & Kuntz 1976 (trematode), Bathymodiolus brooksi Gustafson, Turner, Lutz & Vrijenhoek 1998 (bivalve), Amolops cremnobatus Inger & Kottelat 1998 (frog), Leptothorax caesari Espadaler 1997 (ant), and Daipotamon minos Ng & Trontelj 1996 (crab).