This blog post has some notes in support of a talk given to the Systematics Association meeting in Reading June 20th, 2024.
Slides
I will post a link to the slides here once I have given the talk.
Page, Roderic (2024). Visualising big trees. figshare. Presentation. https://doi.org/10.6084/m9.figshare.26068693.v1
Example web sites
- GBIF Phylogeny Explorer
- TreeVis
- LifeMap
- Kew Tree of Life Explorer
- Taxonium
- old Uniprot tree
- new Uniprot
- NCBI taxonomy
Demos
Kew phylogeny
NCBI
Catalogue of Life
Background reading
- Page, R. (2012) Space, time, form: viewing the Tree of Life https://doi.org/10.1016/j.tree.2011.12.002
- Page, R. (2023). The problem with GBIF’s Phylogeny Explorer. https://doi.org/10.59350/v0bt3-zp114
- PhyloGeo Tool: interactively exploring large phylogenies in an epidemiological context https://doi.org/10.1093/bioinformatics/btx535
- An Adaptive Resolution Tree Visualization of Large Influenza Virus Sequence Datasets https://doi.org/10.1007/978-3-540-72031-7_18
- Constructing Overview + Detail Dendrogram-Matrix Views https://doi.org/10.1109/TVCG.2009.130
- Expand-Ahead: A Space-Filling Strategy for Browsing Trees https://doi.org/10.1109/INFOVIS.2004.21
- Maximum Entropy Summary Trees https://doi.org/10.1111/cgf.12094
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