Taxonomic name timelines for BHL

Given a big corpus of literature one of the fun things to do is look at how the use of a term has changed over time. When did people first use a particular word? When did one word start to replace another, etc.? Google's Ngram Viewer is perhaps the best known tool for exploring these questions.

In the context of biodiversity doing something similar for BHL is an obvious thing to do. I've made various clunky attempts in the past (e.g., Biodiversity Heritage Library sparklines) but these all died.

Ryan Schenk (who did a lot of the user interface for my BioNames project) wrote a very stylish tool to display changes in names over time. Called "Synynyms" his tool is now defunct, but you can read about it here and the source code is on github. Ryan would take a name, find synonyms, then graph the changes in use of all those names over time.

The death of Synynyms has not gone unnoticed:

@rdmpage Is there a service simiar to synynyms to check for nomen usage? synynyms is not available anymore :(

— JCAM (@PhyloJCAM) December 12, 2016

I've had a tool for my own use that searches BHL for a name and displays the results after first trying to aggregate the hits in a sensible way. For example, if there is more than one hit in a scanned volume, and those hits al fall on pages in the same article in BioStor, then I display the BioStor article, instead of a list of each hit separately. Inspired by @PhyloJCAM's question I've built a simple tool to explore the use of one or more name over time.

Located in the "labs" section of BioStor, the BHL timeline takes one or more names and searches for those names in BHL, displaying the results as a chart and a list of hits. I often use it simply to search BHL for a particular name, but you can also use it to compare names, e.g. Aspidoscelis costata and Cnemidophorus costatus:

The timeline tool is pretty crude, and it's slow if there are lots of hits in BHL. So, it's not as slick as Synynyms (Ryan Schenk is a clever programmer than I am). Still, it is a useful way to explore BHL and discover articles that you might not have known existed.

@rdmpage @ryanschenk working great with uninomials, one improvement could be to allow for regular expressions, but already awesme as it is! pic.twitter.com/W6TTRXwszM

— JCAM (@PhyloJCAM) December 15, 2016

DNA barcoding taxonomy now in GBIF

Following on from adding DNA barcodes to GBIF I've now uploaded a taxonomic classification of DNA barcode BINs (Barcode Index Numbers). Each BIN is a cluster of similar DNA barcodes that is essentially equivalent to a species. For more details see:

Ratnasingham, S., & Hebert, P. D. N. (2013, July 8). A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System. (D. Fontaneto, Ed.), PLoS ONE. Public Library of Science (PLoS). https://doi.org/10.1371/journal.pone.0066213

The data I've uploaded was obtained by screen scraping the BOLD web site for each BIN in the DNA barcode dataset (BOLD's API doesn't let me get all the information I want). In addition to the taxonomic hierarchy associated with each BIN I've also extracted any publications mentioned on the BIN page, and subsequently tried to link those to the corresponding DOI, if the publication has one. The code for all this is available on GitHub https://github.com/rdmpage/bold-bins, which also serves as the host for the Darwin Core Archive for this dataset. There's a neat trick where you can use a .gitattributes file to tell GitHub not store certain files in the zip file it creates for the repository (see Excluding files from git archive exports using gitattributes by @fmarier).

Having done this, I've a few thoughts.

Please, please use DOIs for articles

BOLD pages for BINs often include one or more papers that published the barcodes included in that BIN. This is great, but often links to these papers are pretty strange:

Ever wonder why DOIs are nice? Take a look at this URL for an article :O This is why you want to store DOIs in databases, not links... pic.twitter.com/QzthcL8f7k

— Roderic Page (@rdmpage) December 20, 2016

If you are going to store literature in a database treat links to articles with great care. they are often full of extraneous stuff that depends on how the user reached that article online. DOIs greatly simplify this process. Instead of a URL like http://onlinelibrary.wiley.com/store/10.1111/j.1755-0998.2009.02650.x/asset/j.1755-0998.2009.02650.x.pdf?v=1&t=hellc54c&s=e14bbc4146b66a051ad5cd1f5361ac2e16dc5831&systemMessage=Pay+Per+View+will+be+unavailable+for+upto+3+hours+from+06%3A00+EST+March+23rd+ (I kid you not) you should use the DOI 10.1111/j.1755-0998.2009.02650.x.

Adding DOIs to these articles means GBIF will display them on the corresponding species page, for example Centromerus sylvaticus (Blackwall, 1841) has links to these two papers:

Telfer, A., deWaard, J., Young, M., Quinn, J., Perez, K., Sobel, C., … Hebert, P. (2015, August 30). Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve. Biodiversity Data Journal. Pensoft Publishers. https://doi.org/10.3897/bdj.3.e6313

Blagoev, G. A., deWaard, J. R., Ratnasingham, S., deWaard, S. L., Lu, L., Robertson, J., … Hebert, P. D. N. (2015, July 26). Untangling taxonomy: a DNA barcode reference library for Canadian spiders. Molecular Ecology Resources. Wiley-Blackwell. https://doi.org/10.1111/1755-0998.12444

Now GBIF users can easily explore what we know about barcodes from this species by going directly to the primary literature.

Dark taxa

In an earlier post I discussed dark taxa, which are taxa that lack formal scientific names. BOLD is full of these, so many of the taxa I've added to GBIF don't have Linnean names. Instead I've used a combination of higher taxon name and the BIN itself.

Composite taxa

Having said that BINs are essentially the same as species, this need not imply that there's a one-to-one match between BINs and currently recognised species (indeed, this is of the things that makes barcoding so interesting, it's ability to discover hidden variation without taxa currently considered to be a single species). This means that some BINs will have the same name (significant variation within a species), and some BINs will have multiple names (more than one species name assigned to the same BIN). For example, BOLD:AAA2525 is a cluster of DNA barcodes with the following names attached:

• Icaricia lupini
• Icaricia acmon
• Icaricia neurona
• Plebejus lupini
• Aricia sp. RV-2009
• Aricia acmon
• Plebejus acmon
• Plebejus elvira
• Icaricia lupini texanus
• Icaricia lupini monticola
• Icaricia lupini chlorina
• Icaricia lupini lupini
• Icaricia lupini alpicola

This cluster of names includes subspecies, synonyms (e.g. ). Looking at the phylogeny for this BIN (PDF-only) some of these names are intermingled suggesting that some specimens might be misidentified, apparently Icaricia lupini and I. acmon are very similar:

Coutsis, J. G. (2011). The male genitalia of N American Icaricia lupini and I. acmon; how they differ from each other and how they compare to those of the other two members of the group, I. neurona and I. shasta (Lepidoptera: Lycaenidae, Polyommatiti). Phegea, 39(4), 144-151. Retrieved from http://biostor.org/reference/160269

Summary

This is a first attempt to integrate DNA barcode taxonomy into GBIF, so there are going to be some issues to explore. GBIF currently assumes taxa can be easily mapped to a Linnean hierarchy. While this is ultimately likely to be true for animal COI barcodes, getting there is going to be messy while we have numerous dark taxa and/or BINs which don't match the current identifications of the voucher specimens.

Perhaps it's worth asking whether attempt to fit the results of DNA barcoding into a classical taxonomy is the best way forward. In doing so we loose much of what makes barcodoing so powerful, namely a specimen-level phylogenetic tree. Maybe what we should be really thinking about is ways to explore barcoding data natively. See Notes on next steps for the million DNA barcodes map for some thoughts on how to do that.

Image from Wikimedia Commons The Face of a Lupine Blue by Ingrid Taylar.

iBOL DNA barcodes in GBIF

I've uploaded all the COI barcodes in the iBOL public data dumps into GBIF. This is an update of an earlier project that uploaded a small subset. Now that dataset doi:10.15468/inygc6 has been expanded to include some 2.7 million barcodes. In the new GBIF portal (work in progress) the map for these barcodes looks like this:

Many of these records have images of the specimens that were sequenced, and the new GBIF "gallery" feature displays these nicely, e.g.:

Having done this, I've a few thoughts.

Why did I do this?

Why did I do this, or, put another why didn't iBOL do this already? In an ideal world, iBOL would be an active contributor to GBIF and would be routinely uploading barcodes. Since this isn't happening, I've gone ahead and uploaded the barcodes myself. From my perspective, I want as much data to be as discoverable and as accessible as possible, hence if need be I'll grab data from wherever it lives and add it to GBIF (for an earlier example see The Zika virus, GBIF, and the missing mosquitoes). A downside of this is that, long term, the relationship between data provider and GBIF may be as valuable to GBIF as the data, and simply grabbing and reformatting data doesn't, by itself, form that relationship. But in the absence of a working relationship I still need the data.

Where are the taxonomic names

Lots of barcodes lack formal scientific names, even though in many cases BOLD has them. The data in the public dumps often lacks this information. A next logical step would be to harvest data from the BOLD API and add taxonomic names as "identifications".

Where are the sequences?

The sequences themselves aren't in GBIF, which on the one hand is not surprising as GBIF isn't a sequence databases. However, I think it should be, in the sense that for a lot of biodiversity sequences are going to be the only way forward. This includes the eukaryote barcodes, bacterial sequences, and metabarcodes. Fundamentally sequences are just strings of letters, and GBIF already handles those (e.g., taxonomic names, geographic places, etc.). Furthermore, the following paper by Bittner et al. makes a strong case that rather than knowing "what is there?" it's more important to know "what are they doing?"

Bittner, L., Halary, S., Payri, C., Cruaud, C., de Reviers, B., Lopez, P., & Bapteste, E. (2010). Some considerations for analyzing biodiversity using integrative metagenomics and gene networks. Biology Direct. Springer Nature. https://doi.org/10.1186/1745-6150-5-47

In other words, a functional approach may matter more than a purely taxonomic approach to diversity. For a big chunk of biology this is going to depend on analysing sequences. Even if we restrict ourselves to just taxonomic diversity, there is scope for expanding our notion of what we display once we have sequences and evolutionary trees, e.g. Notes on next steps for the million DNA barcodes map.

The Semantic Web made fun: d3sparql

Continuing my on-again off-again relationship with the Semantic Web, I stumbled across a cool approach to visualising the results of SPARQL queries. Toshiaki Katayama (@tktym) has put together d3sparql, a set of Javascript scripts that takes SPARQL queries and formats the results graphically using D3.

For example, give the SPARQL endpoint http://togostanza.org/sparql, the following query retrieves the NCBI classification for the tardigrade family Hypsibiidae:

PREFIX rdfs: PREFIX up: SELECT ?root_name ?parent_name ?child_name FROM <http://togogenome.org/graph/uniprot> WHERE { VALUES ?root_name { "Hypsibiidae" } ?root up:scientificName ?root_name . ?child rdfs:subClassOf+ ?root . ?child rdfs:subClassOf ?parent . ?child up:scientificName ?child_name . ?parent up:scientificName ?parent_name . }

By outputting the results as a list of parent-child pairs, it is straightforward to convert the output of this query into a form that D3 accepts, so we can get a tree like this:

The ability to quickly generate trees, charts, and maps from SPARQL queries makes things a lot easier. We can play around a little and explore things. The strength (and challenge) of SPARQL is that it is very open-ended, you can more or less develop queries to do anything. Being able to visualise the results will help guide that exploration.

The code for d3sparql is on GitHub. One "gotcha" is that the cached examples and external Javascript libraries aren't included. I've forked the repository here and added the missing files, so that if you grab that version it works straight out of the box.

Copyright and the Use of Images as Biodiversity Data

Willi Egloff, Donat Agosti, Puneet Kishor, David Patterson, and Jeremy A. Miller have published an interesting preprint entitled “Copyright and the Use of Images as Biodiversity Data”
DOI:10.1101/087015 in which they argue that taxonomic images aren't copyrightable. I'm not convinced, and have commented on the bioRxiv site. Frustratingly bioRxiv puts comments into a moderation queue (in my opinion the stupidest thing to do if you want to enable conversation) so I've posted my comment here.

It seems to me that there are two deeply problematic aspects to this claim. The first is that taxonomic illustration is not creative. This seems, at best, arguable. I've illustrated new species, and it sure felt like I was doing creative work. Arguably every creative work adheres to conventions of a discipline, how does this by itself make copyright irrelevant?

Secondly, I'm unconvinced that a legal opinion that hasn't been tested in a court is worth much. We can assert whatever interpretation of copyright we want, I doubt that would stop legal action by a person or organisation that felt it could benefit from such action. The real question will be whether treating taxonomic images as outside of copyright would be considered a sufficient threat to someone's business model for them to take action.

I completely support the idea that the images (and all taxonomic-relevant data) should be completely free and open, but simply asserting that it should be doesn't make it so.

EOL Traitbank JSON-LD is broken

One of the most interesting aspects of EOL is "TraitBank", which has been described in a recent paper:

Cynthia S. Parr, Katja S. Schulz, Jennifer Hammock, Nathan Wilson, Patrick Leary, Jeremy Rice, & Robert J. Corrigan. (2016). TraitBank: Practical semantics for organism attribute data. Semantic Web, 7(6), 577–588. https://doi.org/10.3233/SW-150190

TraitBank is available in JSON-LD, and so is potentially part of the Semantic Web. Unfortunately, the JSON-LD provided by TraitBank is broken, to the point that it's hard to believe that anyone's actually consuming the JSON-LD. I know that Google is using EOL data for their knowledge panels, but anyone using TraitBank JSON-LD in a semantic web client is going to run into problems.

First off, let's look at the example provided in the above paper, http://eol.org/api/traits/328067 which returns data for Potos flavus.

{ "@context": { "@vocab": "http://schema.org/", "dwc:taxonID": { "@type": "@id" }, "dwc:resourceID": { "@type": "@id" }, "dwc:relatedResourceID": { "@type": "@id" }, "dwc:relationshipOfResource": { "@type": "@id" }, "dwc:vernacularName": { "@container": "@language" }, "eol:associationType": { "@type": "@id" }, "rdfs:label": { "@container": "@language" }, "dc": "http://purl.org/dc/terms/", "dwc": "http://rs.tdwg.org/dwc/terms/", "eolterms": "http://eol.org/schema/terms/", "eol": "http://eol.org/schema/", "rdfs": "http://www.w3.org/2000/01/rdf-schema#", "gbif": "http://rs.gbif.org/terms/1.0/", "foaf": "http://xmlns.com/foaf/0.1/" }, "@type": "DataFeedItem", "dateModified": "2016-09-30", "item": { "@id": 328067, "@type": "dwc:Taxon", "scientificName": "Potos flavus (Schreber, 1774)", "dwc:taxonRank": "species", "dwc:parentNameUsageID": "http://eol.org/pages/14191", "potentialAction": { "@type": "EntryPoint", "target": { "@type": "Related", "url": "http://eol.org/pages/328067", "actionPlatform": [ "http://schema.org/DesktopWebPlatform", "http://schema.org/IOSPlatform", "http://schema.org/AndroidPlatform" ] } }, "sameAs": [ "http://www.iucnredlist.org/details/41679", "http://genomics.senescence.info/species/entry.php?species=Potos_flavus", "http://commons.wikimedia.org/wiki/Potos_flavus", "http://www.biolib.cz/en/taxon/id1790/", "http://www.iucnredlist.org/apps/redlist/details/41679", "http://www.discoverlife.org/mp/20q?search=Potos+flavus", "http://www.eco-index.org/search/keyword_complete.cfm?keyword=Potos flavus", "http://calphotos.berkeley.edu/cgi/img_query?seq_num=31541&one=T", "http://www.conabio.gob.mx/conocimiento/ise/fichasnom/Potosflavus00.pdf", "http://darnis.inbio.ac.cr/ubis/FMPro?-DB=UBIPUB.fp3&-lay=WebAll&-error=norec.html&-Format=detail.html&-Op=eq&-Find=&id=1689", "http://lod.taxonconcept.org/ses/2mOvV.html", "http://neotropnathistory.lifedesks.org/pages/45271", "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=73392", "http://www.catalogueoflife.org/annual-checklist/details/species/id/6902599", "http://www.catalogueoflife.org/annual-checklist/details/species/id/6902599", "http://genomics.senescence.info/species/entry.php?species=Potos_flavus", "http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=621964", "http://en.wikipedia.org/w/index.php?title=Kinkajou", "http://www.iucnredlist.org/apps/redlist/details/41679", "http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=29067", "http://eol.org/pages/328067", "http://animaldiversity.ummz.umich.edu/accounts/Potos_flavus/" ], "vernacularNames": [ { "@language": "af", "@value": "rolbeer", "gbif:isPreferredName": true }, { "@language": "af", "@value": "rolstaartbeer" }, { "@language": "de", "@value": "wickelbär", "gbif:isPreferredName": true }, { "@language": "en", "@value": "Kinkajou", "gbif:isPreferredName": true }, { "@language": "en", "@value": "honey bear" }, { "@language": "es", "@value": "Ak' a' mash", "gbif:isPreferredName": true }, { "@language": "es", "@value": "Chosna" }, { "@language": "es", "@value": "Cusu" }, { "@language": "es", "@value": "Martilla" }, { "@language": "es", "@value": "Martucha" }, { "@language": "es", "@value": "Mico de noche" }, { "@language": "es", "@value": "Mico león" }, { "@language": "es", "@value": "Mono michi" }, { "@language": "es", "@value": "Perro de monte" }, { "@language": "fi", "@value": "Kinkaju", "gbif:isPreferredName": true }, { "@language": "fr", "@value": "Kinkajou, Singe de nuit", "gbif:isPreferredName": true }, { "@language": "nl", "@value": "rolstaartbeer", "gbif:isPreferredName": true }, { "@language": "nl", "@value": "nachtaap" }, { "@language": "pt-BR", "@value": "Jupará", "gbif:isPreferredName": true } ], "traits": [ { "@id": "http://eol.org/pages/328067/data#data_point_949469", "eol:traitUri": "http://eol.org/resources/704/measurements/basalmetrate113", "@type": "dwc:MeasurementOrFact", "predicate": "metabolic rate", "dwc:measurementType": "http://www.owl-ontologies.com/unnamed.owl#Metabolic_rate", "value": "731.33", "units": "mL/hr O2", "eol:dataPointId": 949469, "http://purl.obolibrary.org/obo/VT_0001259": "http://eol.org/resources/704/measurements/metratemass113", "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Basal metabolic rate was measured when individual(s) were experiencing neither heat nor cold stress (i.e. are in their thermoneutral zone); are resting and calm; and are post–absorptive (are not digesting or absorbing a meal) and data were only accepted where there was also a measure of body mass for the same individual(s). Based on information from primary and secondary literature sources. This value represents a single measure of central tendency for this species. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "731.33", "dwc:measurementUnit": "http://eol.org/schema/terms/mlO2perhour", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_46140963", "eol:traitUri": "http://eol.org/resources/737/measurements/e5775a49cc4bbe3f3ae5c391776a467a", "@type": "dwc:MeasurementOrFact", "predicate": "population trend", "dwc:measurementType": "http://iucn.org/population_trend", "value": "Decreasing", "eol:dataPointId": 46140963, "dc:source": "http://eol.org/resources/737", "dwc:measurementValue": "Decreasing", "dwc:scientificName": "Potos flavus (Schreber, 1774)", "eolterms:resource": "http://eol.org/resources/737" }, { "@id": "http://eol.org/pages/328067/data#data_point_46140962", "eol:traitUri": "http://eol.org/resources/737/measurements/25c8b74374d04260b047bd57570e094b", "@type": "dwc:MeasurementOrFact", "predicate": "habitat", "dwc:measurementType": "http://rs.tdwg.org/dwc/terms/habitat", "value": "terrestrial habitat", "eol:dataPointId": 46140962, "dc:source": "http://eol.org/resources/737", "dwc:measurementValue": "http://purl.obolibrary.org/obo/ENVO_00002009", "dwc:scientificName": "Potos flavus (Schreber, 1774)", "eolterms:resource": "http://eol.org/resources/737" }, { "@id": "http://eol.org/pages/328067/data#data_point_949459", "eol:traitUri": "http://eol.org/resources/704/measurements/maxlongevity138", "@type": "dwc:MeasurementOrFact", "predicate": "total life span", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0001661", "value": "348", "units": "months", "eol:dataPointId": 949459, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Maximum adult age measured either through direct observation, capture-recapture estimates, projected from physical wear or unspecified, using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; in all localities. See source for details.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001114", "dwc:measurementValue": "348", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000035", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949460", "eol:traitUri": "http://eol.org/resources/704/measurements/littersperyear728", "@type": "dwc:MeasurementOrFact", "predicate": "litters per year", "dwc:measurementType": "http://eol.org/schema/terms/LittersPerYear", "value": "1", "eol:dataPointId": 949460, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Number of litters per female per year using non-captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "1", "dwc:scientificName": "Potos flavus", "dwc:sex": "http://purl.obolibrary.org/obo/PATO_0000383" }, { "@id": "http://eol.org/pages/328067/data#data_point_949461", "eol:traitUri": "http://eol.org/resources/704/measurements/littersize1554", "@type": "dwc:MeasurementOrFact", "predicate": "clutch/brood/litter size", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0001933", "value": "1.11", "eol:dataPointId": 949461, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Number of offspring born per litter per female, either counted before birth, at birth or after birth, using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "1.11", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949462", "eol:traitUri": "http://eol.org/resources/704/measurements/interbirthinterval291", "@type": "dwc:MeasurementOrFact", "predicate": "inter-birth interval", "dwc:measurementType": "http://eol.org/schema/terms/InterBirthInterval", "value": "365", "units": "days", "eol:dataPointId": 949462, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "The length of time between successive births of the same female(s) after a successful or unspecified litter using non-captive, wild, provisioned, or unspecified populations; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "365", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000033", "dwc:scientificName": "Potos flavus", "dwc:sex": "http://purl.obolibrary.org/obo/PATO_0000383" }, { "@id": "http://eol.org/pages/328067/data#data_point_949463", "eol:traitUri": "http://eol.org/resources/704/measurements/grmaxlat1392", "@type": "dwc:MeasurementOrFact", "predicate": "latitude", "dwc:measurementType": "http://semanticscience.org/resource/SIO_000319", "value": "23.72", "units": "decimal degrees", "eol:dataPointId": 949463, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Digital geographic range maps of all extant, non-marine mammals from Sechrest (2003) were converted to the Wilson and Reeder (2005) taxonomy. These ranges were used to generate measures of geographic range extent and occupancy. Spatial analyses were performed using ArcGIS (version 9.0) (ESRI 2005) for areas and R (R Development Core Team 2005) for geographic coordinates. Value calculated using a global geographic projection.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001114", "dwc:measurementValue": "23.72", "dwc:measurementUnit": "http://eol.org/schema/terms/decimaldegrees", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949464", "eol:traitUri": "http://eol.org/resources/704/measurements/midrangelong3692", "@type": "dwc:MeasurementOrFact", "predicate": "longitude", "dwc:measurementType": "http://semanticscience.org/resource/SIO_000318", "value": "-68.67", "units": "decimal degrees", "eol:dataPointId": 949464, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Digital geographic range maps of all extant, non-marine mammals from Sechrest (2003) were converted to the Wilson and Reeder (2005) taxonomy. 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The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Digital geographic range maps of all extant, non-marine mammals from Sechrest (2003) were converted to the Wilson and Reeder (2005) taxonomy. 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Realm: Neotropical", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_45346802", "eol:traitUri": "http://eol.org/resources/976/measurements/m_00269863", "@type": "dwc:MeasurementOrFact", "predicate": "geographic distribution includes", "dwc:measurementType": "http://eol.org/schema/terms/Present", "value": "Pantanal", "eol:dataPointId": 45346802, "dc:source": "http://www.worldwildlife.org/publications/wildfinder-database", "dc:bibliographicCitation": "World Wildlife Fund. 2006. WildFinder: Online database of species distributions, ver. Jan-06. www.worldwildlife.org/WildFinder", "dwc:measurementValue": "http://eol.org/schema/terms/Pantanal", "dwc:scientificName": "Potos flavus", "dc:contributor": "Compiler: Sarah Miller", "dwc:measurementRemarks": "Biome: Flooded Grasslands and Savannas

Realm: Neotropical", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_45346801", "eol:traitUri": "http://eol.org/resources/976/measurements/m_00269862", "@type": "dwc:MeasurementOrFact", "predicate": "geographic distribution includes", "dwc:measurementType": "http://eol.org/schema/terms/Present", "value": "Orinoco wetlands", "eol:dataPointId": 45346801, "dc:source": "http://www.worldwildlife.org/publications/wildfinder-database", "dc:bibliographicCitation": "World Wildlife Fund. 2006. WildFinder: Online database of species distributions, ver. Jan-06. www.worldwildlife.org/WildFinder", "dwc:measurementValue": "http://eol.org/schema/terms/Orinoco_wetlands", "dwc:scientificName": "Potos flavus", "dc:contributor": "Compiler: Sarah Miller", "dwc:measurementRemarks": "Biome: Flooded Grasslands and Savannas

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Realm: Nearctic", "eolterms:resource": "http://eol.org/resources/976" }, { "@id": "http://eol.org/pages/328067/data#data_point_949466", "eol:traitUri": "http://eol.org/resources/704/measurements/adultheadbodylen500", "@type": "dwc:MeasurementOrFact", "predicate": "body length (VT)", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0001256", "value": "509.54", "units": "mm", "eol:dataPointId": 949466, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Total length from tip of nose to anus or base of tail of adult (or age unspecified) live, freshly-killed, or museum specimens using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. Based on information from primary and secondary literature sources. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "509.54", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000016", "dwc:scientificName": "Potos flavus", "dwc:lifeStage": "http://www.ebi.ac.uk/efo/EFO_0001272" }, { "@id": "http://eol.org/pages/328067/data#data_point_949467", "eol:traitUri": "http://eol.org/resources/704/measurements/dispersalage94", "@type": "dwc:MeasurementOrFact", "predicate": "dispersal age", "dwc:measurementType": "http://eol.org/schema/terms/DispersalAge", "value": "160", "units": "days", "eol:dataPointId": 949467, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Dispersal Age: Age at which young permanently leave the parent, parental group, social group or any associated territories, using non-captive, wild, non-provisioned or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. Based on information from primary and secondary literature sources. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "160", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000033", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949468", "eol:traitUri": "http://eol.org/resources/704/measurements/dietbreadth467", "@type": "dwc:MeasurementOrFact", "predicate": "diet breadth", "dwc:measurementType": "http://eol.org/schema/terms/DietBreadth", "value": "4", "eol:dataPointId": 949468, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Number of dietary categories eaten by each species measured using any qualitative or quantitative dietary measure, over any period of time, using any assessment method, for non-captive or non-provisioned populations; adult or age unspecified individuals, male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. Categories were defined as vertebrate, invertebrate, fruit, flowers/nectar/pollen, leaves/branches/bark, seeds, grass and roots/tubers. Based on information from primary and secondary literature sources. See source for details.", "dwc:measurementValue": "4", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949470", "eol:traitUri": "http://eol.org/resources/704/measurements/ageateyeopening149", "@type": "dwc:MeasurementOrFact", "predicate": "age at eye opening", "dwc:measurementType": "http://eol.org/schema/terms/AgeAtEyeOpening", "value": "16.95", "units": "days", "eol:dataPointId": 949470, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Age at which both eyes are fully open after birth using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. Based on information from primary and secondary literature sources. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "16.95", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000033", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949471", "eol:traitUri": "http://eol.org/resources/704/measurements/homerangeindiv237", "@type": "dwc:MeasurementOrFact", "predicate": "home range", "dwc:measurementType": "http://www.owl-ontologies.com/unnamed.owl#Home_range", "value": "0.21", "units": "km^2", "eol:dataPointId": 949471, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Size of the area within which everyday activities of individuals are typically restricted, estimated by either direct observation, radio telemetry, trapping or unspecified methods over any duration of time, using non-captive populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "0.21", "dwc:measurementUnit": "http://eol.org/schema/terms/squarekilometer", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949472", "eol:traitUri": "http://eol.org/resources/704/measurements/homerange266", "@type": "dwc:MeasurementOrFact", "predicate": "home range", "dwc:measurementType": "http://www.owl-ontologies.com/unnamed.owl#Home_range", "value": "0.22", "units": "km^2", "eol:dataPointId": 949472, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Size of the area within which everyday activities of individuals or groups (of any type) are typically restricted, estimated by either direct observation, radio telemetry, trapping or unspecified methods over any duration of time, using non-captive populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "0.22", "dwc:measurementUnit": "http://eol.org/schema/terms/squarekilometer", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949473", "eol:traitUri": "http://eol.org/resources/704/measurements/habitatbreadth530", "@type": "dwc:MeasurementOrFact", "predicate": "habitat breadth", "dwc:measurementType": "http://eol.org/schema/terms/HabitatBreadth", "value": "2", "eol:dataPointId": 949473, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Number of habitat layers used by each species measured using any qualitative or quantitative time measure, for non-captive populations; adult or age unspecified individuals, male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. Categories were defined as above ground dwelling, aquatic, fossorial and ground dwelling. Based on information from primary and secondary literature sources. See source for details.", "dwc:measurementValue": "2", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949474", "eol:traitUri": "http://eol.org/resources/704/measurements/gestationlen520", "@type": "dwc:MeasurementOrFact", "predicate": "gestation period duration", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0002292", "value": "116.8", "units": "days", "eol:dataPointId": 949474, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Gestation Length: Length of time of non-inactive fetal growth, using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. Gestation was measured between specified start and end points as follows: Start points – conception, fertilization, first observed copulation, fertilization, implantation, laying, palpably pregnant, removal of pouch young, capture (except marsupials) or unspecified. End points – birth, hatching or unspecified. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "116.8", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000033", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949475", "eol:traitUri": "http://eol.org/resources/704/measurements/grarea125", "@type": "dwc:MeasurementOrFact", "predicate": "geographic range (size of area)", "dwc:measurementType": "http://eol.org/schema/terms/GeographicRangeArea", "value": "12770952.51", "units": "km^2", "eol:dataPointId": 949475, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Geographic Range (Area): Digital geographic range maps of all extant, non-marine mammals from Sechrest (2003) were converted to the Wilson and Reeder (2005) taxonomy. These ranges were used to generate measures of geographic range extent and occupancy. Spatial analyses were performed using ArcGIS (version 9.0) (ESRI 2005) for areas and R (R Development Core Team 2005) for geographic coordinates. Area was calculated using the total extent of a species range with a global equal-area projection (Mollweide).", "dwc:measurementValue": "12770952.51", "dwc:measurementUnit": "http://eol.org/schema/terms/squarekilometer", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949476", "eol:traitUri": "http://eol.org/resources/704/measurements/weaningage363", "@type": "dwc:MeasurementOrFact", "predicate": "weaning age", "dwc:measurementType": "http://eol.org/schema/terms/WeaningAge", "value": "109.13", "units": "days", "eol:dataPointId": 949476, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Weaning Age: Age when primary nutritional dependency on the mother ends and independent foraging begins to make a major contribution to the offspring’s energy requirements, measured as either weaning/lactation length, nutritionally independent, first solid food, last observed nursing, age at first flight (bats only), age at pouch exit or length of teat Attachment (marsupials only) or unspecified definition, using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "109.13", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000033", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949477", "eol:traitUri": "http://eol.org/resources/704/measurements/grmidrangelat2607", "@type": "dwc:MeasurementOrFact", "predicate": "latitude", "dwc:measurementType": "http://semanticscience.org/resource/SIO_000319", "value": "0.3", "units": "decimal degrees", "eol:dataPointId": 949477, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Digital geographic range maps of all extant, non-marine mammals from Sechrest (2003) were converted to the Wilson and Reeder (2005) taxonomy. These ranges were used to generate measures of geographic range extent and occupancy. Spatial analyses were performed using ArcGIS (version 9.0) (ESRI 2005) for areas and R (R Development Core Team 2005) for geographic coordinates. Value calculated using a global geographic projection.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001110", "dwc:measurementValue": "0.3", "dwc:measurementUnit": "http://eol.org/schema/terms/decimaldegrees", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949478", "eol:traitUri": "http://eol.org/resources/704/measurements/grminlat3805", "@type": "dwc:MeasurementOrFact", "predicate": "latitude", "dwc:measurementType": "http://semanticscience.org/resource/SIO_000319", "value": "-23.1", "units": "decimal degrees", "eol:dataPointId": 949478, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Digital geographic range maps of all extant, non-marine mammals from Sechrest (2003) were converted to the Wilson and Reeder (2005) taxonomy. These ranges were used to generate measures of geographic range extent and occupancy. Spatial analyses were performed using ArcGIS (version 9.0) (ESRI 2005) for areas and R (R Development Core Team 2005) for geographic coordinates. Value calculated using a global geographic projection.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001113", "dwc:measurementValue": "-23.1", "dwc:measurementUnit": "http://eol.org/schema/terms/decimaldegrees", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949479", "eol:traitUri": "http://eol.org/resources/704/measurements/grmaxlong3243", "@type": "dwc:MeasurementOrFact", "predicate": "longitude", "dwc:measurementType": "http://semanticscience.org/resource/SIO_000318", "value": "-34.79", "units": "decimal degrees", "eol:dataPointId": 949479, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Digital geographic range maps of all extant, non-marine mammals from Sechrest (2003) were converted to the Wilson and Reeder (2005) taxonomy. These ranges were used to generate measures of geographic range extent and occupancy. Spatial analyses were performed using ArcGIS (version 9.0) (ESRI 2005) for areas and R (R Development Core Team 2005) for geographic coordinates. Value calculated using a global geographic projection.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001114", "dwc:measurementValue": "-34.79", "dwc:measurementUnit": "http://eol.org/schema/terms/decimaldegrees", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949480", "eol:traitUri": "http://eol.org/resources/704/measurements/hupopdenmean2854", "@type": "dwc:MeasurementOrFact", "predicate": "human population density", "dwc:measurementType": "http://eol.org/schema/terms/HumanPopulationDensity", "value": "25.77", "units": "individuals per square kilometer", "eol:dataPointId": 949480, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Variables describing the anthropogenic and environmental conditions within the geographic range of a species were generated based on the extent of digital species range maps from Sechrest (2003) converted to the Wilson and Reeder (2005) taxonomy. The species ranges were first gridded at 0.5 degrees using a global geographic projection and species were scored as present in each cell if any of the range intersected that cell. Summary statistics for a species were then calculated by summarizing the value for each anthropogenic and environmental variable (gridded to the same extent) for all the cells the species was present. The summary statistics for each variable was adjusted for the fact that area varies with latitude by multiplying each cell by the area and then dividing by the total area of cells for that variable for a species. Mean Human Population Density calculated using the Gridded Population of the World (GPW) (CIESIN and CIAT 2005) for 1995.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001109", "dwc:measurementValue": "25.77", "dwc:measurementUnit": "http://eol.org/schema/terms/individualspersquarekilometer", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949481", "eol:traitUri": "http://eol.org/resources/704/measurements/aetmean1232", "@type": "dwc:MeasurementOrFact", "predicate": "actual evapotranspiration rate in geographic range", "dwc:measurementType": "http://eol.org/schema/terms/AETinRange", "value": "1306.64", "units": "millimeters per month", "eol:dataPointId": 949481, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Variables describing the environmental conditions within the geographic range of a species were generated based on the extent of digital species range maps from Sechrest (2003) converted to the Wilson and Reeder (2005) taxonomy. The species ranges were first gridded at 0.5 degrees using a global geographic projection and species were scored as present in each cell if any of the range intersected that cell. Summary statistics for a species were then calculated by summarizing the value for each environmental variable (gridded to the same extent) for all the cells the species was present. The summary statistics for each variable was adjusted for the fact that area varies with latitude by multiplying each cell by the area and then dividing by the total area of cells for that variable for a species. Mean Monthly AET from 1920 to 1980 (mm) was calculated using the Global Resource Information Database of UNEP and is available from http://www.grid.unep.ch/data/grid/gnv183.php.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001109", "dwc:measurementValue": "1306.64", "dwc:measurementUnit": "http://eol.org/schema/terms/millimeterspermonth", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949482", "eol:traitUri": "http://eol.org/resources/704/measurements/adultbodymass768", "@type": "dwc:MeasurementOrFact", "predicate": "body mass", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0001259", "value": "2441.81", "units": "g", "eol:dataPointId": 949482, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Mass of adult (or age unspecified) live or freshly-killed specimens (excluding pregnant females) using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. Based on information from primary and secondary literature sources. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "2441.81", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000021", "dwc:scientificName": "Potos flavus", "dwc:lifeStage": "http://www.ebi.ac.uk/efo/EFO_0001272" }, { "@id": "http://eol.org/pages/328067/data#data_point_949491", "eol:traitUri": "http://eol.org/resources/704/measurements/activitycycle556", "@type": "dwc:MeasurementOrFact", "predicate": "behavioral circadian rhythm", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0001502", "value": "nocturnal", "eol:dataPointId": 949491, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Activity cycle of each species measured for non-captive populations; adult or age unspecified individuals, male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. Species were defined as (1) nocturnal only, (2) nocturnal/crepuscular, cathemeral, crepuscular or diurnal/crepuscular and (3) diurnal only. Based on information from primary and secondary literature sources. See source for details.", "dwc:measurementValue": "http://www.owl-ontologies.com/unnamed.owl#Nocturnal", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949483", "eol:traitUri": "http://eol.org/resources/704/measurements/socialgrpsize618", "@type": "dwc:MeasurementOrFact", "predicate": "social group size", "dwc:measurementType": "http://eol.org/schema/terms/SocialGroupSize", "value": "1", "eol:dataPointId": 949483, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Social Group Size: Number of individuals, adults or definition unspecified in a group that spends the majority of their time in a 24 hour cycle together where there is some indication that these individuals form a social cohesive unit, measured over any duration of time, using non-captive populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "1", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949484", "eol:traitUri": "http://eol.org/resources/704/measurements/sexualmaturityage215", "@type": "dwc:MeasurementOrFact", "predicate": "onset of fertility", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0002683", "value": "858.41", "units": "days", "eol:dataPointId": 949484, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Sexual Maturity Age: Age when individuals are first physically capable of reproducing, defined as either physically sexually mature, age at first mating or unspecified (males and females), age at first estrus or age at first pregnancy (females only), age at spermatogenesis or age at testes descent (males only), using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals, primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "858.41", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000033", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949485", "eol:traitUri": "http://eol.org/resources/704/measurements/populationdensity532", "@type": "dwc:MeasurementOrFact", "predicate": "animal population density", "dwc:measurementType": "http://purl.bioontology.org/ontology/CSP/2383-1863", "value": "34.21", "units": "individuals per square kilometer", "eol:dataPointId": 949485, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Population Density: Number of individuals per square kilometer, estimated with either direct, indirect or unspecified counts, measured in any area size within a human, ecological or unspecified boundary, over any duration of time, using non-captive, non-provisioned populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "34.21", "dwc:measurementUnit": "http://eol.org/schema/terms/individualspersquarekilometer", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949486", "eol:traitUri": "http://eol.org/resources/704/measurements/neonateheadbodylen38", "@type": "dwc:MeasurementOrFact", "predicate": "body length (VT)", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0001256", "value": "183.03", "units": "mm", "eol:dataPointId": 949486, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Neonate Head Body Length: Total length from tip of nose to anus or base of tail of live, freshly-killed, or museum specimens of infants at either a near term embryonic stage, birth, immediately after birth or up to an age of seven days after birth, using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "183.03", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000016", "dwc:scientificName": "Potos flavus", "dwc:lifeStage": "http://purl.bioontology.org/ontology/CSP/0070-1441" }, { "@id": "http://eol.org/pages/328067/data#data_point_949487", "eol:traitUri": "http://eol.org/resources/704/measurements/neonatalbodymass321", "@type": "dwc:MeasurementOrFact", "predicate": "body mass", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0001259", "value": "171.84", "units": "g", "eol:dataPointId": 949487, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Neonatal Body Mass: Mass of live or freshly-killed specimens of infants at either a near term embryonic stage, birth, immediately after birth or up to an age of seven days after birth, using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "171.84", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000021", "dwc:scientificName": "Potos flavus", "dwc:lifeStage": "http://purl.bioontology.org/ontology/CSP/0070-1441" }, { "@id": "http://eol.org/pages/328067/data#data_point_949492", "eol:traitUri": "http://eol.org/resources/704/measurements/trophiclevel1154", "@type": "dwc:MeasurementOrFact", "predicate": "trophic level", "dwc:measurementType": "http://eol.org/schema/terms/TrophicLevel", "value": "omnivore", "eol:dataPointId": 949492, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Trophic level of each species measured using any qualitative or quantitative dietary measure, over any period of time, using any assessment method, for non-captive or non-provisioned populations; adult or age unspecified individuals, male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details. Species were defined as (1) http://www.owl-ontologies.com/unnamed.owl#Primary__Herbivore, (2) http://www.owl-ontologies.com/unnamed.owl#Omnivore and (3) http://www.owl-ontologies.com/unnamed.owl#Primary__Carnivore", "dwc:measurementValue": "http://www.owl-ontologies.com/unnamed.owl#Omnivore", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949493", "eol:traitUri": "http://eol.org/resources/704/measurements/terrestriality1036", "@type": "dwc:MeasurementOrFact", "predicate": "terrestriality", "dwc:measurementType": "http://eol.org/schema/terms/Terrestriality", "value": "above ground dwelling", "eol:dataPointId": 949493, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Degree of terrestriality of each species measured using any qualitative or quantitative time measure, for non-captive populations; adult or age unspecified individuals, male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. Species were defined as (1) fossorial and/or ground dwelling only and (2) above ground dwelling. See source for details.", "dwc:measurementValue": "http://eol.org/schema/terms/aboveGroundDwelling", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949494", "eol:traitUri": "http://eol.org/resources/704/measurements/teatnumber630", "@type": "dwc:MeasurementOrFact", "predicate": "teat number", "dwc:measurementType": "http://purl.obolibrary.org/obo/CMO_0000445", "value": "2", "eol:dataPointId": 949494, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Total number of teats present, using captive, wild, provisioned, or unspecified populations; male, female, or sex unspecified individuals; primary, secondary, or extrapolated sources; all measures of central tendency; in all localities. See source for details.", "eolterms:statisticalMethod": "http://eol.org/schema/terms/average", "dwc:measurementValue": "2", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949495", "eol:traitUri": "http://eol.org/resources/704/measurements/hupopdenchange1541", "@type": "dwc:MeasurementOrFact", "predicate": "human population density change", "dwc:measurementType": "http://eol.org/schema/terms/HumanPopulationDensityChange", "value": "0.12", "eol:dataPointId": 949495, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Variables describing the anthropogenic and environmental conditions within the geographic range of a species were generated based on the extent of digital species range maps from Sechrest (2003) converted to the Wilson and Reeder (2005) taxonomy. The species ranges were first gridded at 0.5 degrees using a global geographic projection and species were scored as present in each cell if any of the range intersected that cell. Summary statistics for a species were then calculated by summarizing the value for each anthropogenic and environmental variable (gridded to the same extent) for all the cells the species was present. The summary statistics for each variable was adjusted for the fact that area varies with latitude by multiplying each cell by the area and then dividing by the total area of cells for that variable for a species. Human Population Density Change calculated using the Gridded Population of the World (GPW) (CIESIN and CIAT 2005) for 1990 and 1995 as: (1995–1990)/1990.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001109", "dwc:measurementValue": "0.12", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949488", "eol:traitUri": "http://eol.org/resources/704/measurements/precipmean1381", "@type": "dwc:MeasurementOrFact", "predicate": "precipitation in geographic range", "dwc:measurementType": "http://eol.org/schema/terms/PrecipitationInRange", "value": "153.67", "units": "millimeters per month", "eol:dataPointId": 949488, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Variables describing the environmental conditions within the geographic range of a species were generated based on the extent of digital species range maps from Sechrest (2003) converted to the Wilson and Reeder (2005) taxonomy. The species ranges were first gridded at 0.5 degrees using a global geographic projection and species were scored as present in each cell if any of the range intersected that cell. Summary statistics for a species were then calculated by summarizing the value for each environmental variable (gridded to the same extent) for all the cells the species was present. The summary statistics for each variable was adjusted for the fact that area varies with latitude by multiplying each cell by the area and then dividing by the total area of cells for that variable for a species. Mean Monthly Precipitation was calculated using data from ftp://ftp.ngdc.noaa.gov/Solid_Earth/Ecosystems/GEDII_a/datasets/a03/lc.htm", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001109", "dwc:measurementValue": "153.67", "dwc:measurementUnit": "http://eol.org/schema/terms/millimeterspermonth", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949489", "eol:traitUri": "http://eol.org/resources/704/measurements/tempmean1181", "@type": "dwc:MeasurementOrFact", "predicate": "temperature in geographic range", "dwc:measurementType": "http://eol.org/schema/terms/TemperatureInRange", "value": "241.49", "units": "0.1°C", "eol:dataPointId": 949489, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Variables describing the environmental conditions within the geographic range of a species were generated based on the extent of digital species range maps from Sechrest (2003) converted to the Wilson and Reeder (2005) taxonomy. The species ranges were first gridded at 0.5 degrees using a global geographic projection and species were scored as present in each cell if any of the range intersected that cell. Summary statistics for a species were then calculated by summarizing the value for each environmental variable (gridded to the same extent) for all the cells the species was present. The summary statistics for each variable was adjusted for the fact that area varies with latitude by multiplying each cell by the area and then dividing by the total area of cells for that variable for a species. Mean Monthly Temperature was calculated using data from ftp://ftp.ngdc.noaa.gov/Solid_Earth/Ecosystems/GEDII_a/datasets/a03/lc.htm", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001109", "dwc:measurementValue": "241.49", "dwc:measurementUnit": "http://eol.org/schema/terms/onetenthdegreescelsius", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_949490", "eol:traitUri": "http://eol.org/resources/704/measurements/petmean1637", "@type": "dwc:MeasurementOrFact", "predicate": "potential evapotranspiration rate in geographic range", "dwc:measurementType": "http://eol.org/schema/terms/PETinRange", "value": "1552.99", "units": "millimeters per month", "eol:dataPointId": 949490, "dc:source": "Data set supplied by Kate E. Jones. The data can also be accessed at Ecological Archives E090-184-D1, http://esapubs.org/archive/ecol/E090/184/, http://esapubs.org/archive/ecol/E090/184/PanTHERIA_1-0_WR05_Aug2008.txt", "dc:bibliographicCitation": "Kate E. Jones, Jon Bielby, Marcel Cardillo, Susanne A. Fritz, Justin O'Dell, C. David L. Orme, Kamran Safi, Wes Sechrest, Elizabeth H. Boakes, Chris Carbone, Christina Connolly, Michael J. Cutts, Janine K. Foster, Richard Grenyer, Michael Habib, Christopher A. Plaster, Samantha A. Price, Elizabeth A. Rigby, Janna Rist, Amber Teacher, Olaf R. P. Bininda-Emonds, John L. Gittleman, Georgina M. Mace, and Andy Purvis. 2009. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 90:2648.", "dwc:measurementMethod": "Variables describing the environmental conditions within the geographic range of a species were generated based on the extent of digital species range maps from Sechrest (2003) converted to the Wilson and Reeder (2005) taxonomy. The species ranges were first gridded at 0.5 degrees using a global geographic projection and species were scored as present in each cell if any of the range intersected that cell. Summary statistics for a species were then calculated by summarizing the value for each environmental variable (gridded to the same extent) for all the cells the species was present. The summary statistics for each variable was adjusted for the fact that area varies with latitude by multiplying each cell by the area and then dividing by the total area of cells for that variable for a species. Mean Monthly PET from 1920 to 1980 (mm) was calculated using the Global Resource Information Database of UNEP and is available from http://www.grid.unep.ch/data/grid/gnv183.php.", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001109", "dwc:measurementValue": "1552.99", "dwc:measurementUnit": "http://eol.org/schema/terms/millimeterspermonth", "dwc:scientificName": "Potos flavus" }, { "@id": "http://eol.org/pages/328067/data#data_point_3088883", "eol:traitUri": "http://eol.org/resources/691/measurements/69d7a1a9ffaff268e9c33532e53b703d", "@type": "dwc:MeasurementOrFact", "predicate": "total life span", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0001661", "value": "38.4", "units": "years", "eol:dataPointId": 3088883, "dc:source": "http://eol.org/resources/691", "eolterms:statisticalMethod": "http://semanticscience.org/resource/SIO_001114", "dwc:measurementValue": "38.4", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000036", "dwc:establishmentMeans": "captivity", "dwc:scientificName": "Potos flavus", "dwc:measurementRemarks": "Confidence in the longevity data (data quality) is classified as: 'low' (only used for species without an established maximum longevity in AnAge), 'questionable', 'acceptable' and 'high'. This qualifier is based on the reliability of the original reference from which maximum longevity was obtained, sample size, whether a given species has been studied and reproduces in captivity, and whether there are any conflicting reports.", "http://purl.bioontology.org/ontology/CSP/5004-0024": "acceptable", "eolterms:SampleSize": "medium (100-1000)" }, { "@id": "http://eol.org/pages/328067/data#data_point_3088886", "eol:traitUri": "http://eol.org/resources/691/measurements/5db8448e3c63697d1fc9c7fe858fcb6e", "@type": "dwc:MeasurementOrFact", "predicate": "inter-birth interval", "dwc:measurementType": "http://eol.org/schema/terms/InterBirthInterval", "value": "365", "units": "days", "eol:dataPointId": 3088886, "dc:source": "http://eol.org/resources/691", "dwc:measurementValue": "365", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000033", "dwc:scientificName": "Potos flavus", "dwc:measurementRemarks": "Life history data based on reviews and large-scale datasets, see source for details." }, { "@id": "http://eol.org/pages/328067/data#data_point_3088887", "eol:traitUri": "http://eol.org/resources/691/measurements/0f71656d0cadba03f37cfd2a6b7244a0", "@type": "dwc:MeasurementOrFact", "predicate": "prenatal development duration", "dwc:measurementType": "http://eol.org/schema/terms/PrenatalDevelopmentDuration", "value": "115", "units": "days", "eol:dataPointId": 3088887, "dc:source": "http://eol.org/resources/691", "dwc:measurementValue": "115", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000033", "dwc:scientificName": "Potos flavus", "dwc:measurementRemarks": "Life history data based on reviews and large-scale datasets, see source for details." }, { "@id": "http://eol.org/pages/328067/data#data_point_3088888", "eol:traitUri": "http://eol.org/resources/691/measurements/f8277fc9a1f3d10916edfd5cffeffdc0", "@type": "dwc:MeasurementOrFact", "predicate": "growth rate", "dwc:measurementType": "http://purl.bioontology.org/ontology/SNOMEDCT/260865002", "value": "0.0102", "units": "per day", "eol:dataPointId": 3088888, "dc:source": "http://eol.org/resources/691", "dwc:measurementMethod": "Growth rate values represent postnatal growth rate and are expressed in days^-1. They were calculated by fitting empirical data taken from published growth curves to sigmoidal growth functions and are considered appropriate for comparative analyses within the same taxonomic class. Please be aware, however, that growth rates for mammals were derived from the Gompertz function while growth rates for birds were derived from the logistic function, so comparisons between the two classes need to take this into account.", "dwc:measurementValue": "0.0102", "dwc:measurementUnit": "http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C66968", "dwc:scientificName": "Potos flavus", "dwc:measurementRemarks": "Life history data based on reviews and large-scale datasets, see source for details." }, { "@id": "http://eol.org/pages/328067/data#data_point_3088890", "eol:traitUri": "http://eol.org/resources/691/measurements/574019b2a04efde1bc240b5ee4734607", "@type": "dwc:MeasurementOrFact", "predicate": "litters per year", "dwc:measurementType": "http://eol.org/schema/terms/LittersPerYear", "value": "1", "units": "per year", "eol:dataPointId": 3088890, "dc:source": "http://eol.org/resources/691", "dwc:measurementValue": "1", "dwc:measurementUnit": "http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C74924", "dwc:scientificName": "Potos flavus", "dwc:measurementRemarks": "Life history data based on reviews and large-scale datasets, see source for details." }, { "@id": "http://eol.org/pages/328067/data#data_point_3088898", "eol:traitUri": "http://eol.org/resources/691/measurements/1f5690594d4585ff240eb80832fa545f", "@type": "dwc:MeasurementOrFact", "predicate": "clutch/brood/litter size", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0001933", "value": "1", "eol:dataPointId": 3088898, "dc:source": "http://eol.org/resources/691", "dwc:measurementValue": "1", "dwc:scientificName": "Potos flavus", "dwc:measurementRemarks": "Life history data based on reviews and large-scale datasets, see source for details." }, { "@id": "http://eol.org/pages/328067/data#data_point_3088892", "eol:traitUri": "http://eol.org/resources/691/measurements/3f0f0a942ddd9132ceab8114e84932ee", "@type": "dwc:MeasurementOrFact", "predicate": "body 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"dwc:measurementRemarks": "Life history data based on reviews and large-scale datasets, see source for details." }, { "@id": "http://eol.org/pages/328067/data#data_point_3088895", "eol:traitUri": "http://eol.org/resources/691/measurements/c571f299213b2adf9d00ba8c471f34e5", "@type": "dwc:MeasurementOrFact", "predicate": "basal metabolic rate", "dwc:measurementType": "http://purl.bioontology.org/ontology/SNOMEDCT/165109007", "value": "4.294", "units": "Watts", "eol:dataPointId": 3088895, "dc:source": "http://eol.org/resources/691", "dwc:measurementValue": "4.294", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000114", "dwc:scientificName": "Potos flavus", "dwc:measurementRemarks": "Life history data based on reviews and large-scale datasets, see source for details." }, { "@id": "http://eol.org/pages/328067/data#data_point_3088877", "eol:traitUri": "http://eol.org/resources/691/measurements/f87d325d2c58bf3d7c2f67e7c93157d9", "@type": "dwc:MeasurementOrFact", "predicate": "weight", "dwc:measurementType": "http://purl.obolibrary.org/obo/PATO_0000128", "value": "175", "units": "g", "eol:dataPointId": 3088877, "dc:source": "http://eol.org/resources/691", "dwc:measurementValue": "175", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000021", "dwc:scientificName": "Potos flavus", "dwc:measurementRemarks": "Life history data based on reviews and large-scale datasets, see source for details.", "dwc:lifeStage": "http://purl.obolibrary.org/obo/UBERON_0007221" }, { "@id": "http://eol.org/pages/328067/data#data_point_3088897", "eol:traitUri": "http://eol.org/resources/691/measurements/fcc14c8eaddcf18e4cdb45ea090fc422", "@type": "dwc:MeasurementOrFact", "predicate": "weaning age", "dwc:measurementType": "http://eol.org/schema/terms/WeaningAge", "value": "119", "units": "days", "eol:dataPointId": 3088897, "dc:source": "http://eol.org/resources/691", "dwc:measurementValue": "119", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000033", "dwc:scientificName": "Potos flavus", "dwc:measurementRemarks": "Life history data based on reviews and large-scale datasets, see source for details." }, { "@id": "http://eol.org/pages/328067/data#data_point_3088874", "eol:traitUri": "http://eol.org/resources/691/measurements/8a6e95b1e2a88d0d84f6f00cb5d56e00", "@type": "dwc:MeasurementOrFact", "predicate": "onset of fertility", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0002683", "value": "550", "units": "days", "eol:dataPointId": 3088874, "dc:source": "http://eol.org/resources/691", "dwc:measurementValue": "550", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000033", "dwc:scientificName": "Potos flavus", "dwc:sex": "http://purl.obolibrary.org/obo/PATO_0000384", "dwc:measurementRemarks": "Life history data based on reviews and large-scale datasets, see source for details." }, { "@id": "http://eol.org/pages/328067/data#data_point_3088876", "eol:traitUri": "http://eol.org/resources/691/measurements/17acf3ae09f206eaf581ae826311efd5", "@type": "dwc:MeasurementOrFact", "predicate": "onset of fertility", "dwc:measurementType": "http://purl.obolibrary.org/obo/VT_0002683", "value": "820", "units": "days", "eol:dataPointId": 3088876, "dc:source": "http://eol.org/resources/691", "dwc:measurementValue": "820", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000033", "dwc:scientificName": "Potos flavus", "dwc:sex": "http://purl.obolibrary.org/obo/PATO_0000383", "dwc:measurementRemarks": "Life history data based on reviews and large-scale datasets, see source for details." }, { "@id": "http://eol.org/pages/328067/data#data_point_3088879", "eol:traitUri": "http://eol.org/resources/691/measurements/5b43dc69c1b59a20644b6970c8a0e319", "@type": "dwc:MeasurementOrFact", "predicate": "weight", "dwc:measurementType": "http://purl.obolibrary.org/obo/PATO_0000128", "value": "3000", "units": "g", "eol:dataPointId": 3088879, "dc:source": "http://eol.org/resources/691", "dwc:measurementValue": "3000", "dwc:measurementUnit": "http://purl.obolibrary.org/obo/UO_0000021", "dwc:scientificName": "Potos flavus", "dwc:measurementRemarks": "Life history data based on reviews and large-scale datasets, see source for details.", "dwc:lifeStage": "http://www.ebi.ac.uk/efo/EFO_0001272" }, { "@id": "http://eol.org/pages/328067/data#data_point_46140957", "eol:traitUri": "http://eol.org/resources/737/measurements/966ec81d2a39e775ad34a3b8e523f9b6", "@type": "dwc:MeasurementOrFact", "predicate": "conservation status", "dwc:measurementType": "http://rs.tdwg.org/ontology/voc/SPMInfoItems#ConservationStatus", "value": "least concern", "eol:dataPointId": 46140957, "dc:source": "http://eol.org/resources/737", "dwc:measurementValue": "http://eol.org/schema/terms/leastConcern", "dwc:scientificName": "Potos flavus (Schreber, 1774)", "eolterms:Reviewer": "Duckworth, J.W. & Belant, J. (Small Carnivore Red List Authority)", "eolterms:Assessor": "Kays, R., Reid, F., Schipper, J. & Helgen, K.", "eolterms:Version": "3.1", "dwc:measurementRemarks": "Older designation \"Lower Risk/least concern (LR/lc)\" indicates this species has not been reevaluated since 2000", "dwc:measurementDeterminedDate": "2008", "eolterms:resource": "http://eol.org/resources/737" }, { "@id": "http://eol.org/pages/328067/data#data_point_40249312", "eol:traitUri": "http://eol.org/resources/368/measurements/b35f3fd12fbbecc41eedb6b4ea7652d1", "@type": "dwc:MeasurementOrFact", "predicate": "last appearance (younger bound)", "dwc:measurementType": "http://eol.org/schema/terms/paleo_lastapp_la", "value": "0.00000", "units": "million years ago", "eol:dataPointId": 40249312, "dc:source": "http://paleobiodb.org/cgi-bin/bridge.pl?a=checkTaxonInfo&is_real_user=1&taxon_no=232927", "dwc:measurementValue": "0.00000", "dwc:measurementUnit": "http://eol.org/schema/terms/paleo_megaannum", "dwc:scientificName": 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Life history characteristics of placental non-volant mammals. 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Johns Hopkins University Press, Baltimore.", "dc:bibliographicCitation": "Kissling, W.D., Dalby, L., Fløjgaard, C., Lenoir, J., Sandel., B., Sandom, C., Trøjelsgaard, K. & Svenning, J.-C.: Establishing macroecological trait datasets: digitalization, extrapolation, and validation of diet preferences in terrestrial mammals worldwide. Ecology and Evolution DOI: 10.1002/ece3.1136.", "dwc:measurementValue": "http://www.wikidata.org/entity/Q164509", "dwc:scientificName": "Potos flavus", "eolterms:resource": "http://eol.org/resources/1003" } ] } }

If I paste this into the JSON-LD playground and try and convert it to N-Quads I get a flurry of errors. Here are some of the problems (see also EOL JSON-LD not valid #352:

The @id for the EOL taxon is a number instead of a URI

The field "@id": 328067 should be "@id": "http://eol.org/pages/328067". Identifiers on the Semantic Web are URIs not numbers.

Vernacular names can't have additional fields

EOL sometimes indicates the preferred vernacular name like this:

      {
        "@language": "es",
        "@value": "Ak' a' mash",
        "gbif:isPreferredName": true
      },

This is not valid syntax and breaks RDF parsers.

URIs as strings

In several places EOL outputs URIs as simple strings rather than as URIs. For example, to indicate that the parent taxon of Potos flavus is the genus Potos the JSON-LD has:

"dwc:parentNameUsageID": "http://eol.org/pages/14191",

But this is simply saying that the string value for "dwc:parentNameUsageID" is "http://eol.org/pages/14191". In JSON-LD this should be:

"dwc:parentNameUsageID":{"@id":"http:\/\/eol.org\/pages\/14191"}

This syntax ensures that http://eol.org/pages/14191 is interpreted as a URI, which also means clients "know" that they can resolve that URI to get more information.

Predicates with missing (hence wrong) namespace

A number of predicates in the JSON-LD don't have a namespace specified, hence they default to being part of the schema.org vocabulary. For example, this statement:

"scientificName": "Potos flavus (Schreber, 1774)",

results in "scientificName" being interpreted as "http://schema.org/scientificName" (because "http://schema.org/" is set as the default @vocab). This is incorrect, "scientificName" should be "dwc:scientificName".

Then there are predicates such as "predicate" and "value" in the data sections that missing the correct namespace (in this case http://www.w3.org/1999/02/22-rdf-syntax-ns#). For example,

{ "@id": "http://eol.org/pages/328067/data#data_point_46140963", "eol:traitUri": "http://eol.org/resources/737/measurements/e5775a49cc4bbe3f3ae5c391776a467a", "@type": "dwc:MeasurementOrFact", "predicate": "population trend", "dwc:measurementType": "http://iucn.org/population_trend", "value": "Decreasing", "eol:dataPointId": 46140963, "dc:source": "http://eol.org/resources/737", "dwc:measurementValue": "Decreasing", "dwc:scientificName": "Potos flavus (Schreber, 1774)", "eolterms:resource": "http://eol.org/resources/737" }

(This example also has URIs as dumb strings, not as URIs).

Anyone constructing, say, SPARQL queries on this data is going to be using terms such as predicate that don't exist.

Some data records have the predicate "units" - I haven't yet figured out what, if any, vocabulary that predicate comes from.

Summary

I think TraitBank has a lot of potential, and welcome the use of JSON-LD and the schema.org vocabulary. These are both steps forward in the goal of interoperable biodiversity data. But this data will only become interoperable if we take care to ensure that the data we output is what we say it is. EOL TraitBank JSON-LD isn't valid JSON-LD. This also illustrates a bigger problem, we are continually building systems that don't have users. If anyone was using TraitBank JSON-LD with standard Semantic Web clients, they would be up in arms about this. The best way to avoid these situations is for the developers to be users as well (see GBIF, biodiversity informatics and the "platform rant"). Until we "dog food" our own services we will continue to produce data and services that are less than useful. If EOL was itself built on TraitBank, I doubt we'd have these problems.