tag:blogger.com,1999:blog-16081779.post991516542938343209..comments2023-10-28T09:24:38.420+01:00Comments on iPhylo: Nature PrecedingsRoderic Pagehttp://www.blogger.com/profile/00269598293846172649noreply@blogger.comBlogger2125tag:blogger.com,1999:blog-16081779.post-82673666076506689762007-10-03T18:38:00.000+01:002007-10-03T18:38:00.000+01:00The method implemented in GeneTree (paper availabl...The method implemented in GeneTree (paper available free from <A HREF="http://bioinformatics.oxfordjournals.org/cgi/content/abstract/14/9/819" REL="nofollow">here</A>) is rather neglected, I agree. Once nice use of this sort of approach is Mike Sanderson and Michelle McMahon's BMC Evolutionary Biology paper (<A HREF="http://dx.doi.org/10.1186/1471-2148-7-S1-S3" REL="nofollow">doi:10.1186/1471-2148-7-S1-S3</A>).<BR/><BR/>The limitation of the method implemented in GeneTree (as opposed to the software itself, which is ancient) is that it doesn't handle lateral gene transfer.Roderic Pagehttps://www.blogger.com/profile/00269598293846172649noreply@blogger.comtag:blogger.com,1999:blog-16081779.post-1065725891516028112007-10-03T18:26:00.000+01:002007-10-03T18:26:00.000+01:00What's wrong with: Page, R. D. M. 1998. GeneTree: ...What's wrong with: <BR/>Page, R. D. M. 1998. GeneTree: comparing gene and species<BR/>phylogenies using reconciled trees. Bioinformatics Applications<BR/>Note 41: 819–820.<BR/><BR/>This paper should be better known.Anonymousnoreply@blogger.com